Browse Element(s) Details


Os.5639.1.S1_at

Description gb:AK070813.1
DB_XREF= gi:32980836
TID=Os.5639.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073C13, full insert sequence.
FL= gb:AK070813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4272011/11anthocyanin-related membrane protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42710OsAffx.29635.1.S1_at11/118+26884119..26894386NB-ARC domain containing protein
LOC_Os08g42720Os.5639.1.S1_at11/118+26894750..26899312anthocyanin-related membrane protein 1, putative, expressed
LOC_Os08g42730Os.14174.1.S1_at11/118+26902095..26905995Biotin synthase, putative, expressed
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed
LOC_Os08g42750Os.12642.1.S1_at11/118+26922219..26926514Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5639.1.S1_at--311--4131Chr08:26895267..26895291 (25 bp)
CGCAGGTCGCCGGAGCTAGTGACAA
LOC_Os08g42720
Os.5639.1.S1_at--364--4491Chr08:26895217..26895241 (25 bp)
GCCGGAATGCAGAACTCCTCGTGAA
LOC_Os08g42720
Os.5639.1.S1_at--1049--9231Chr08:26895202..26895226 (25 bp)
TCCTCGTGAATTGAAGCTCCGGTGC
LOC_Os08g42720
Os.5639.1.S1_at--1007--8231Chr08:26895158..26895182 (25 bp)
GGCACGATCTCTCTCTAACAAGGGA
LOC_Os08g42720
Os.5639.1.S1_at--1078--2871Chr08:26895139..26895163 (25 bp)
AAGGGATCATCGTTAACTGCGTGCG
LOC_Os08g42720
Os.5639.1.S1_at--260--1991Chr08:26895124..26895148 (25 bp)
ACTGCGTGCGAGTACACGTACTTAC
LOC_Os08g42720
Os.5639.1.S1_at--371--9811Chr08:26895072..26895096 (25 bp)
TAACATCAGGTTTAGTGCGGGTGGA
LOC_Os08g42720
Os.5639.1.S1_at--96--9011Chr08:26894987..26895011 (25 bp)
TGAAGGAGCCGAACTGAGGACCAGA
LOC_Os08g42720
Os.5639.1.S1_at--1070--5351Chr08:26894950..26894974 (25 bp)
GAAGCTTTCCTCACCTTTTATTATT
LOC_Os08g42720
Os.5639.1.S1_at--735--1311Chr08:26894889..26894913 (25 bp)
AGATGTGCCAATTTCTTTTGTTTTT
LOC_Os08g42720
Os.5639.1.S1_at--405--10791Chr08:26894872..26894896 (25 bp)
TTGTTTTTGTCTTTGCAACTGGCAG
LOC_Os08g42720
Target Sequence 
CGCAGGTCGCCGGAGCTAGTGACAAGCAGGGCAAAGCGGGCGATGAAGAGGCCGGAATGCAGAACTCCTCGTGAATTGAA
GCTCCGGTGCCNGCATCTGCATCGGCATCGGCACGATCTCTCTCTAACAAGGGATCATCGTTAACTGCGTGCGAGTACAC
GTACTTACAGGGAAATATGTTAGTTGTTGATGAATTAACATCAGGTTTAGTGCGGGTGGAGTGAGGGAGGACAGGCAGTA
ATTGATTGAGCAGATGGGTAGAAGAGATCAAACGATGGACTGAAGGAGCCGAACTGAGGACCAGAAAAACTGGGCAGGAA
GCTTTCCTCACCTTTTATTATTTTATAAAATATATACATCAATAATTTTACAATAAATAGATGTGCCAATTTCTTTTGTT
TTTGTCTTTGCAACTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis