Browse Element(s) Details


Os.56726.1.S1_x_at

Description gb:AK110348.1
DB_XREF= gi:32995557
TID=Os.56726.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-G12, full insert sequence.
FL= gb:AK110348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3019010/11protein kinase family protein, putative, expressed
LOC_Os07g057401/11leucine-rich repeat family protein, putative, expressed
LOC_Os08g385601/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56726.1.S1_x_at--811--5791Chr09:18375092..18375116 (25 bp)
GACGCTGGTGCTCTCGGGCACCAAC
LOC_Os09g30190
Os.56726.1.S1_x_at--1049--1272Chr09:18375127..18375151 (25 bp)
AGATCCCACCGGAGCTCGGCGAATA
LOC_Os09g30190
Os.56726.1.S1_x_at--30--9331Chr09:18375160..18375184 (25 bp)
TCGCCACGCTTGACGTCAGCAAGAA
LOC_Os09g30190
Os.56726.1.S1_x_at--243--8351Chr09:18375220..18375244 (25 bp)
GGCTGTCCAAGCTCGAGTCGCTGTC
LOC_Os09g30190
Os.56726.1.S1_x_at--765--3711Chr09:18375308..18375332 (25 bp)
CTACCTGACGCTCTACGACAACGAG
LOC_Os09g30190
Os.56726.1.S1_x_at--814--9532Chr09:18375319..18375343 (25 bp)
TCTACGACAACGAGCTGAGCGGCGC
LOC_Os09g30190
Os.56726.1.S1_x_at--896--4611Chr09:18375351..18375375 (25 bp)
GCGAGCATCGGCAACCTGAAGCGGC
LOC_Os09g30190
Os.56726.1.S1_x_at--28--5991Chr09:18375471..18375495 (25 bp)
GAGACCGGCATGTCCGGCAGCTTGC
LOC_Os09g30190
Os.56726.1.S1_x_at--31--5071Chr09:18375487..18375511 (25 bp)
GCAGCTTGCCGGACACGATCGGGCA
LOC_Os09g30190
Os.56726.1.S1_x_at--122--511Chr09:18375504..18375528 (25 bp)
ATCGGGCAGCTCAGCCGCATCCAGA
LOC_Os09g30190
Os.56726.1.S1_x_at--884--3911NONE
CGGCCTCCATCATTAATATCTTGGT
NONE
Target Sequence 
GACGCTGGTGCTCTCGGGCACCAACCTCACCGGCGAGATCCCACCGGAGCTCGGCGAATACGGCGAGCTCGCCACGCTTG
ACGTCAGCAAGAACCAGCTCACCGGCGCGATCCCGCCCGAGCTCTGCCGGCTGTCCAAGCTCGAGTCGCTGTCCCTCAAC
TCCAACTCGCTCCGCGGCGCCATCCCCGACGACATCGGCAACCTCACCGCGCTCGCCTACCTGACGCTCTACGACAACGA
GCTGAGCGGCGCGATCCCGGCGAGCATCGGCAACCTGAAGCGGCTGCAGGTGCTCCGCGCCGGCGGGAACCAGGGGCTGA
AGGGCCCGCTCCCGCCGGAGATCGGCGGCTGCGCCAACCTCACCATGCTCGGCCTCGCCGAGACCGGCATGTCCGGCAGC
TTGCCGGACACGATCGGGCAGCTCAGCCGCATCCAGACCATCGCCATCTACACCACCCTCCTCTCAGGCCGCATCCCGGC
CTCCATCATTAATATCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56726.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis