Browse Element(s) Details


Os.56849.1.S1_x_at

Description gb:AK110492.1
DB_XREF= gi:32995701
TID=Os.56849.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-C01, full insert sequence.
FL= gb:AK110492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2260011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22590Os.56004.1.S1_at11/113+12983522..12986948MtN3/saliva family protein, expressed
LOC_Os03g22600Os.56849.1.S1_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22600Os.56849.1.S1_x_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22620Os.20572.2.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22620Os.52722.1.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56849.1.S1_x_at--1026--1851Chr03:13003712..13003736 (25 bp)
ACGACGCGGCGCTCTTCTTCGGGTG
LOC_Os03g22600
Os.56849.1.S1_x_at--655--771Chr03:13003635..13003659 (25 bp)
ATGTCGCCGCGGGACAGCTACGCGT
LOC_Os03g22600
Os.56849.1.S1_x_at--1020--7971Chr03:13003562..13003586 (25 bp)
GGATGCGGCTGACGGACCTGGAGAA
LOC_Os03g22600
Os.56849.1.S1_x_at--871--5291Chr03:13003540..13003564 (25 bp)
GAAGGACCAGGTGAGCATGCGGCGG
LOC_Os03g22600
Os.56849.1.S1_x_at--850--3531Chr03:13003348..13003372 (25 bp)
CATCTCCTGATCATGGTGACGACGA
LOC_Os03g22600
Os.56849.1.S1_x_at--950--5771Chr03:13003331..13003355 (25 bp)
GACGACGATGGTGATGGTGCAATTA
LOC_Os03g22600
Os.56849.1.S1_x_at--271--5211Chr03:13003278..13003302 (25 bp)
GAATTTTTGTGGGATTTGGATGCGA
LOC_Os03g22600
Os.56849.1.S1_x_at--31--611Chr03:13003259..13003283 (25 bp)
ATGCGAATTTGCAGTTGTTGTAATA
LOC_Os03g22600
Os.56849.1.S1_x_at--386--831Chr03:13003211..13003235 (25 bp)
ATGGATGATTTCGATGTAGGTGTAC
LOC_Os03g22600
Os.56849.1.S1_x_at--786--6931Chr03:13003196..13003220 (25 bp)
GTAGGTGTACAAATTAATGTGCAGA
LOC_Os03g22600
Os.56849.1.S1_x_at--625--831Chr03:13003169..13003193 (25 bp)
ATGGATCATATGCTAAGTTTCTGTG
LOC_Os03g22600
Target Sequence 
ACGACGCGGCGCTCTTCTTCGGGTGCGCCGCCGCCGCCGCGGCGCCGCGGTCGGGGAGCGGGGTGGGTAGCGGGGCGATG
TCGCCGCGGGACAGCTACGCGTCGGTGCGGCGGGAGAACCGGGAGCTGAAGCTGGAGGTGGCGCGGATGCGGATGCGGCT
GACGGACCTGGAGAAGGACCAGGTGAGCATGCGGCGGGAGCTGGTGCGCGTCGGCCCGGCGAACCGCCTCCTCCGCGGCC
TCGCGCGGCGACTCGGCTCGCTCTTCCACTTCCGGGGCGCCGCCGCCGAGCCGGGCCTCCAGCAGCTCGGCGCCAAGGCC
ACCGCCGACGCCAAGGTCCTCTTCCAGCGCCGCCGCCGCCACTCCATCTCCTGATCATGGTGACGACGATGGTGATGGTG
CAATTAATGAATTTTTGGATGTTGTTGTTGTTGTGAATTTTTGTGGGATTTGGATGCGAATTTGCAGTTGTTGTAATATG
GGGATTGTTATTGATGGATGGATGGATGATTTCGATGTAGGTGTACAAATTAATGTGCAGATTATGGATCATATGCTAAG
TTTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56849.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis