Browse Element(s) Details


Os.56004.1.S1_at

Description gb:AK109114.1
DB_XREF= gi:32994323
TID=Os.56004.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C05, full insert sequence.
FL= gb:AK109114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2259011/11MtN3/saliva family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22580Os.51334.1.S1_at10/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22580OsAffx.25193.1.S1_x_at9/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22590Os.56004.1.S1_at11/113+12983522..12986948MtN3/saliva family protein, expressed
LOC_Os03g22600Os.56849.1.S1_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22600Os.56849.1.S1_x_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56004.1.S1_at--242--1631Chr03:12984032..12984056 (25 bp)
AGCGGCCAGCTGACGATGACGCCAT
LOC_Os03g22590
Os.56004.1.S1_at--218--10231Chr03:12983907..12983931 (25 bp)
TATTGAGCTGCTTGTACTGCACGCG
LOC_Os03g22590
Os.56004.1.S1_at--550--7391Chr03:12983883..12983907 (25 bp)
GTGATGACCACGACTGACCAGAGTG
LOC_Os03g22590
Os.56004.1.S1_at--329--151Chr03:12983853..12983877 (25 bp)
ATTACTGTGTGTTAGCTGCAGCTCA
LOC_Os03g22590
Os.56004.1.S1_at--637--111Chr03:12983829..12983853 (25 bp)
ATTCTAGCTGAATCGCATGCATCTT
LOC_Os03g22590
Os.56004.1.S1_at--315--8951Chr03:12983746..12983770 (25 bp)
TGACTGTATGTATCTGTTGCCGCGT
LOC_Os03g22590
Os.56004.1.S1_at--1082--4511Chr03:12983728..12983752 (25 bp)
GCCGCGTTCTTTATTCTGAGTTGTA
LOC_Os03g22590
Os.56004.1.S1_at--548--2111Chr03:12983662..12983686 (25 bp)
ACATGATCATCTATCAGCTGCTGGT
LOC_Os03g22590
Os.56004.1.S1_at--671--3991Chr03:12983632..12983656 (25 bp)
CGTGTATCGCCGTACGTGTATGATT
LOC_Os03g22590
Os.56004.1.S1_at--77--4871Chr03:12983582..12983606 (25 bp)
GCTAGTACGTGGCATCTCAGTTTAT
LOC_Os03g22590
Os.56004.1.S1_at--373--10011Chr03:12983552..12983576 (25 bp)
TAGCTAGACACTGTACTGCTCTCCA
LOC_Os03g22590
Target Sequence 
AGCGGCCAGCTGACGATGACGCCATCGACCACAGGAGCGTCGTCGTCGACATCCCGCCGCCGCCGCAGCCGCCGCCGGCG
CTGCCGGCCGTGGAGGTGGCCTGATCGATCAGTGAGAGGGTGACGTATTGAGCTGCTTGTACTGCACGCGTGATGACCAC
GACTGACCAGAGTGACCTAATTACTGTGTGTTAGCTGCAGCTCATTCTAGCTGAATCGCATGCATCTTAGCTAATTAATT
ATTATATATATCTGCATGCTTAATTAATTAAGTCGCGATATATATGTGACTGTATGTATCTGTTGCCGCGTTCTTTATTC
TGAGTTGTAGGATGATTAGAATTTTGCTAGTGGGCTAAGTACATGTATGCACATGATCATCTATCAGCTGCTGGTCGATG
CGTGTATCGCCGTACGTGTATGATTGGGGACACGTGTACTGCATCTGCATGCTAGTACGTGGCATCTCAGTTTATGGTAC
TAGCTAGACACTGTACTGCTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis