Browse Element(s) Details


Os.30634.1.S1_at

Description gb:AK108555.1
DB_XREF= gi:32993764
TID=Os.30634.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131B07.13 (B1131B07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E10, full insert sequence.
FL= gb:AK108555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5169010/11WRKY DNA binding domain containing protein, expressed
LOC_Os03g225701/11MIF4G domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006412biological_processprotein biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0000339molecular_functionRNA cap binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30634.1.S1_at--566--6011Chr01:30048316..30048340 (25 bp)
GAGAGAGACAAGAACGACCCGCGGT
LOC_Os01g51690
Os.30634.1.S1_at--1118--1791Chr01:30048300..30048324 (25 bp)
ACCCGCGGTACGTGGTGACGATGTA
LOC_Os01g51690
Os.30634.1.S1_at--982--7931Chr01:30048192..30048216 (25 bp)
GGATCAGTCACCCAGACCTTAATTA
LOC_Os01g51690
Os.30634.1.S1_at--236--1571Chr01:30048167..30048191 (25 bp)
AGCTAGGATATGCTTTGCCGGCCCA
LOC_Os01g51690
Os.30634.1.S1_at--849--7531Chr01:30048139..30048163 (25 bp)
GTGGCTTAGCTTGATGTGCAGCTCT
LOC_Os01g51690
Os.30634.1.S1_at--258--6931Chr01:30048107..30048131 (25 bp)
GTATGGGCTGTACGGTTCAGTTATT
LOC_Os01g51690
Os.30634.1.S1_at--1120--6632Chr03:12962248..12962267 (20 bp)
GTTGTTAATGTTTGCCTACTGATTT
LOC_Os03g22570
Os.30634.1.S1_at--1111--5671Chr01:30047934..30047958 (25 bp)
GACATTAGCTAGGTTTGCTCACTTT
LOC_Os01g51690
Os.30634.1.S1_at--1110--331NONE
ATAACAAGTTTCCTTTCGTGCCACT
NONE
Os.30634.1.S1_at--894--3991Chr01:30047873..30047897 (25 bp)
CGTCCCTAGGTCAGTGTTTGGCAAA
LOC_Os01g51690
Os.30634.1.S1_at--774--2391Chr01:30047840..30047864 (25 bp)
AAAAATGTCCGTGTTGCCAATTAAT
LOC_Os01g51690
Target Sequence 
GAGAGAGACAAGAACGACCCGCGGTACGTGGTGACGATGTACGAGGGGATCCACAACCACGTGTGCCCCGGCACTGTCTA
CTACGCCGCGCAGGACGCCGCCTCCGGCCGCTTTTTCGTCGCCGGGATCAGTCACCCAGACCTTAATTAAGCTAGGATAT
GCTTTGCCGGCCCAGCTGTGGCTTAGCTTGATGTGCAGCTCTAGTTATTGTATGGGCTGTACGGTTCAGTTATTTGAAGC
GGGTTATACTTATATGTTGTTAATGTTTGCCTACTGATTTTAATTAATTTCTTAGAGTTAGACTCAATTTGGCGGAGGGA
TTCCCTTCAAAAAAAGAAATCCCTTCAAAAAATTTGGCGGAGGGACGACTGATATATATGGTGACATTAGCTAGGTTTGC
TCACTTTTGGCAAAAATAACAAGTTTCCTTTCGTGCCACTCTCCGTCCCTAGGTCAGTGTTTGGCAAAACGCCCAAAAAA
ATGTCCGTGTTGCCAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis