Browse Element(s) Details


Os.40181.2.S1_s_at

Description gb:NM_191744.1
DB_XREF= gi:34910571
GEN=B1131B07.14
TID=Os.40181.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40181 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RAB7A protein (GTP-binding protein) (B1131B07.14), mRNA.
PROD=putative RAB7A protein (GTP-binding protein)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5170010/11Ras-related protein Rab7, putative, expressed
LOC_Os05g460002/11Ras-related protein Rab7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40181.2.S1_s_at--386--8792Chr05:26581865..26581884 (20 bp)
TGTTCACAAGAAGTTTAGCCAGCAG
LOC_Os05g46000
Os.40181.2.S1_s_at--910--4831Chr01:30061132..30061156 (25 bp)
GCTACAATTGGTGCGGATTTCGTCA
LOC_Os01g51700
Os.40181.2.S1_s_at--777--9132Chr05:26581906..26581925 (20 bp)
TGCGGATTTCGTCACCAAGGAGGTC
LOC_Os05g46000
Os.40181.2.S1_s_at--22--2811NONE
AAGATAGGCTCGTGACTCTGCAGAT
NONE
Os.40181.2.S1_s_at--169--7371Chr01:30060982..30061102 (25 bp)
GTGACTCTGCAGATCTGGGACACTG
LOC_Os01g51700
Os.40181.2.S1_s_at--1080--4331Chr01:30060941..30060965 (25 bp)
CCAGAGTCTTGGTGTTGCGTTTTAC
LOC_Os01g51700
Os.40181.2.S1_s_at--651--51Chr01:30060906..30060930 (25 bp)
ATTGTTGTGTGCTCGTCTATGACGT
LOC_Os01g51700
Os.40181.2.S1_s_at--236--5771Chr01:30060886..30060910 (25 bp)
GACGTCAATTCTAACAGGTCATTTG
LOC_Os01g51700
Os.40181.2.S1_s_at--1013--8951Chr01:30060863..30060887 (25 bp)
TGACACGCTCAACACATGGCATGAT
LOC_Os01g51700
Os.40181.2.S1_s_at--974--8492Chr01:30060847..30060871 (25 bp)
TGGCATGATGAGTTCCTCAACCAAG
LOC_Os01g51700
Os.40181.2.S1_s_at--472--9891Chr01:30057309..30057333 (25 bp)
TACTTCCAGACGGTTGTTCCAGATC
LOC_Os01g51700
Target Sequence 
TGTTCACAAGAAGTTTAGCCAGCAGTACAAAGCTACAATTGGTGCGGATTTCGTCACCAAGGAGGTCCTCATTGAAGATA
GGCTCGTGACTCTGCAGATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTTACAGAGGAGCA
GATTGTTGTGTGCTCGTCTATGACGTCAATTCTAACAGGTCATTTGACACGCTCAACACATGGCATGATGAGTTCCTCAA
CCAAGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCA
GAGTGGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCTTATTTTGAAACTTCTGCAAAAGAG
GACCGCAATGTCGACAGTGCGTTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATCTACTTCCA
GACGGTTGTTCCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40181.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis