Browse Element(s) Details


Os.27635.3.A1_x_at

Description gb:CB680941
DB_XREF= gi:29684666
DB_XREF=OSJNEf06I19.r
CLONE=OSJNEf06I19
TID=Os.27635.3
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.27635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (B1131B07.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5171011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27635.3.A1_x_at--427--2311Chr01:30063985..30064009 (25 bp)
AAAGGCATTCTTCAGCAATCCCGAG
LOC_Os01g51710
Os.27635.3.A1_x_at--466--7771Chr01:30063671..30063695 (25 bp)
GGTGAAATTCTTCTGCAGCAAATGT
LOC_Os01g51710
Os.27635.3.A1_x_at--755--971Chr01:30063631..30063655 (25 bp)
AGGAGCTTCTATTGCCCAACAGTGA
LOC_Os01g51710
Os.27635.3.A1_x_at--753--3111Chr01:30063602..30063626 (25 bp)
AATTTCAGGCAGAGCGCATTTCAGA
LOC_Os01g51710
Os.27635.3.A1_x_at--786--691Chr01:30063516..30063540 (25 bp)
ATGAGTGTCAACGACAACCTCGGCA
LOC_Os01g51710
Os.27635.3.A1_x_at--235--3791Chr01:30063498..30063522 (25 bp)
CTCGGCACTGCAGCCAATGTGGTGA
LOC_Os01g51710
Os.27635.3.A1_x_at--523--6351Chr01:30063444..30063468 (25 bp)
GATCCACCACCGTTGAGGTTGAGGT
LOC_Os01g51710
Os.27635.3.A1_x_at--531--10751Chr01:30063426..30063450 (25 bp)
TTGAGGTTGGTGCTTCTGGCTATAT
LOC_Os01g51710
Os.27635.3.A1_x_at--248--131Chr01:30063366..30063390 (25 bp)
ATTCATGTAGTTTCTGCTCGGCAAA
LOC_Os01g51710
Os.27635.3.A1_x_at--228--5131Chr01:30063338..30063362 (25 bp)
GCACAATAGGCGTACATGCCCGAAA
LOC_Os01g51710
Os.27635.3.A1_x_at--1010--8871Chr01:30063228..30063252 (25 bp)
TGATGGTCGCTTTCATTTCCTTATA
LOC_Os01g51710
Target Sequence 
AAAGGCATTCTTCAGCAATCCCGAGAATCGGCTTAAGAGAAGCATTGCCATGAAAGGGGTGAAATTCTTCTGCAGCAAAT
GTGGGCAAGAAGGTCATAGGAGCTTCTATTGCCCAACAGTGAGAGAAATTTCAGGCAGAGCGCATTTCAGATGCCGATTA
TGTGGGGGAAAGGGTCATAATAGCCGAACATGTGGAAAGCCAAAGTCAGAGAATGAGTGTCAACGACAACCTCGGCACTG
CAGCCAATGTGGTGAAAGGGGGCACAACCGTCGTAACTGTCCCAGATCCACCACCGTTGAGGTTGAGGTTGGTGCTTCTG
GCTATATAGTTAAACAAGATAATGTTCATAGTTCAGGTATTTATTCATGTAGTTTCTGCTCGGCAAAGGGGCACAATAGG
CGTACATGCCCGAAAAGAAAGGCTAGCATAGGGCAGCAGAAAGATTGAAATATANANGTTAATCCACATAGCAATCTTAT
GGTGTTTGCTGAAAAGTTTGTGATGGTCGCTTTCATTTCCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27635.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis