Browse Element(s) Details


OsAffx.11565.1.S1_at

Description gb:NM_191746.1
DB_XREF= gi:34910575
GEN=B1131B07.16
TID=OsAffx.11565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1131B07.16 (B1131B07.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5172011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11565.1.S1_at--419--6091Chr01:30067952..30067976 (25 bp)
GAGTACGCCAAGGTCAGTGCTTTGC
LOC_Os01g51720
OsAffx.11565.1.S1_at--76--1191Chr01:30067953..30067977 (25 bp)
AGTACGCCAAGGTCAGTGCTTTGCA
LOC_Os01g51720
OsAffx.11565.1.S1_at--385--6991Chr01:30067954..30067978 (25 bp)
GTACGCCAAGGTCAGTGCTTTGCAA
LOC_Os01g51720
OsAffx.11565.1.S1_at--198--9951Chr01:30067955..30067979 (25 bp)
TACGCCAAGGTCAGTGCTTTGCAAT
LOC_Os01g51720
OsAffx.11565.1.S1_at--1010--1811Chr01:30067956..30067980 (25 bp)
ACGCCAAGGTCAGTGCTTTGCAATT
LOC_Os01g51720
OsAffx.11565.1.S1_at--538--4391Chr01:30067958..30067982 (25 bp)
GCCAAGGTCAGTGCTTTGCAATTGC
LOC_Os01g51720
OsAffx.11565.1.S1_at--543--3211Chr01:30067960..30067984 (25 bp)
CAAGGTCAGTGCTTTGCAATTGCAG
LOC_Os01g51720
OsAffx.11565.1.S1_at--766--2891Chr01:30067961..30067985 (25 bp)
AAGGTCAGTGCTTTGCAATTGCAGG
LOC_Os01g51720
OsAffx.11565.1.S1_at--1083--3671Chr01:30067971..30067995 (25 bp)
CTTTGCAATTGCAGGTTGTAGCTAT
LOC_Os01g51720
OsAffx.11565.1.S1_at--1114--5191Chr01:30067975..30067999 (25 bp)
GCAATTGCAGGTTGTAGCTATGCTT
LOC_Os01g51720
OsAffx.11565.1.S1_at--218--71Chr01:30067978..30068002 (25 bp)
ATTGCAGGTTGTAGCTATGCTTCAC
LOC_Os01g51720
Target Sequence 
GAGTACGCCAAGGTCAGTGCTTTGCAATTGCAGGTTGTAGCTATGCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis