Browse Element(s) Details


OsAffx.25193.1.S1_x_at

Description tigr:9631.m02253
TID=OsAffx.25193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g225809/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22580Os.51334.1.S1_at10/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22580OsAffx.25193.1.S1_x_at9/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22590Os.56004.1.S1_at11/113+12983522..12986948MtN3/saliva family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25193.1.S1_x_at--1049--4771Chr03:12973670..12973694 (25 bp)
GCTGCGATCGCTAGGATGGAGAATT
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--31--10471Chr03:12973637..12973661 (25 bp)
TTGACGGTGGGCAGGAACCTTGACC
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--195--1751NONE
ACCTTTTGTGCTCATGCCTATGAAC
NONE
OsAffx.25193.1.S1_x_at--1151--331Chr03:12973045..12973069 (25 bp)
ATAAAATGGCTTCTGCCGCTTTAGC
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--928--7531Chr03:12973004..12973028 (25 bp)
GTGGCTTACCTCAAAGCAGCGTATT
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--403--5011Chr03:12972989..12973013 (25 bp)
GCAGCGTATTACAAACACCCTAGTG
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--448--2131Chr03:12972942..12972966 (25 bp)
ACAGTCGGTTGTACAGATAGCTCCA
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--799--291NONE
ATAGCTCCAGGTGAATCTCCATCAT
NONE
OsAffx.25193.1.S1_x_at--192--4511Chr03:12970803..12970827 (25 bp)
GCCGTTCGTAACCAAGCACACTTAT
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--663--1011Chr03:12969526..12969550 (25 bp)
AGGTTGCTATTGCTTCTGCTGCTAG
LOC_Os03g22580
OsAffx.25193.1.S1_x_at--106--2571Chr03:12969483..12969507 (25 bp)
AACTGTGGACGATGGTCTTGCTTCA
LOC_Os03g22580
Target Sequence 
GCTGCGATCGCTAGGATGGAGAATTGGAGACGGTTGACGGTGGGCAGGAACCTTGACCACAGCCTCGCCACCTTTTGTGC
TCATGCCTATGAACGATGCAATAAAATGGCTTCTGCCGCTTTAGCATATAAATGTGTAGAAGTGGCTTACCTCAAAGCAG
CGTATTACAAACACCCTAGTGCAAGCAAGGATCGACAAGAACTACAGTCGGTTGTACAGATAGCTCCAGGTGAATCTCCA
TCATCGTCTGCCTCAGATATCGATAATTTAAATAGCCATGGATTGTCAAAGGCCCTTTCAACCAAGGGTGGAAACTCACC
CCAAGTGGCTGGCAACCATTTGCCACTGGCCGTTCGTAACCAAGCACACTTATTGAGGTTACTTGCCTATACAAATGATG
TCAATTGTGCATTCGATGCAACTCGGAAATCACAGGTTGCTATTGCTTCTGCTGCTAGCAGTCAGGAAAGGGGAAAAACT
GTGGACGATGGTCTTGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25193.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis