Browse Element(s) Details


OsAffx.12994.1.S1_at

Description tigr:9631.m02251
TID=OsAffx.12994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2256011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22519Os.51598.1.S1_s_at10/113+12916497..12917048expressed protein
LOC_Os03g22530NANA3+12920799..12921245Lichenase II precursor, putative
LOC_Os03g22540Os.5672.1.S1_at11/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22540OsAffx.13634.1.S1_at1/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22550OsAffx.25192.1.S1_at11/113+12933425..12938180cation efflux family protein, putative
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22580Os.51334.1.S1_at10/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22580OsAffx.25193.1.S1_x_at9/113+12967773..12977499CW-type Zinc Finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12994.1.S1_at--911--1411Chr03:12941021..12941045 (25 bp)
AGACAACCATGGTAGCATCCTCAAG
LOC_Os03g22560
OsAffx.12994.1.S1_at--917--8051Chr03:12940991..12941015 (25 bp)
GGAGACTACTTCCAGTTCAAACACC
LOC_Os03g22560
OsAffx.12994.1.S1_at--671--6031Chr03:12940966..12940990 (25 bp)
GAGATCGCTCATGATGCCCCGGAGG
LOC_Os03g22560
OsAffx.12994.1.S1_at--311--2451Chr03:12940940..12940964 (25 bp)
AACAAGAGGAGGACCTGCCAACCCT
LOC_Os03g22560
OsAffx.12994.1.S1_at--106--10531Chr03:12940905..12940929 (25 bp)
TTCAGGCTTCTTCGCAGGCAATGAA
LOC_Os03g22560
OsAffx.12994.1.S1_at--1094--4991Chr03:12940892..12940916 (25 bp)
GCAGGCAATGAATCCTCGGAGGCAA
LOC_Os03g22560
OsAffx.12994.1.S1_at--12--2931Chr03:12940869..12940893 (25 bp)
AAGGAACCAGAGTCAGGCCTCCCAC
LOC_Os03g22560
OsAffx.12994.1.S1_at--321--2771Chr03:12940841..12940865 (25 bp)
AAGAGCCCTTGAAGCGGTCGCCTTT
LOC_Os03g22560
OsAffx.12994.1.S1_at--1129--4431Chr03:12940815..12940839 (25 bp)
GCCTCCTCGGAAGCGGGAAGCGCAA
LOC_Os03g22560
OsAffx.12994.1.S1_at--583--5891Chr03:12940755..12940779 (25 bp)
GAGCTCGCAAGTCCACCAAGGAGGC
LOC_Os03g22560
OsAffx.12994.1.S1_at--951--2911Chr03:12940738..12940762 (25 bp)
AAGGAGGCAGCTTCCGTGTCCACCA
LOC_Os03g22560
Target Sequence 
AGACAACCATGGTAGCATCCTCAAGAATAAGGAGACTACTTCCAGTTCAAACACCGAGATCGCTCATGATGCCCCGGAGG
CAACAAGAGGAGGACCTGCCAACCCTCAGCCTGATCTTCAGGCTTCTTCGCAGGCAATGAATCCTCGGAGGCAAGGAACC
AGAGTCAGGCCTCCCACGGCAAGAGCCCTTGAAGCGGTCGCCTTTGGCCTCCTCGGAAGCGGGAAGCGCAAGGCTGACCC
CACTGGCTCGAGCAGGCCTCGTCAGCGAGCTCGCAAGTCCACCAAGGAGGCAGCTTCCGTGTCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis