Browse Element(s) Details


Os.5672.1.S1_at

Description gb:BI813259
DB_XREF= gi:16579164
DB_XREF=J009B12
CLONE=J009B12
TID=Os.5672.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5672 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172380.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2254011/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22500OsAffx.25191.1.S1_at11/113+12905217..12906646hypothetical protein
LOC_Os03g22500Os.32925.1.S1_at1/113+12905217..12906646hypothetical protein
LOC_Os03g22510NANA3+12909096..12909630flowering promoting factor-like 1, putative, expressed
LOC_Os03g22519Os.51598.1.S1_s_at10/113+12916497..12917048expressed protein
LOC_Os03g22530NANA3+12920799..12921245Lichenase II precursor, putative
LOC_Os03g22540Os.5672.1.S1_at11/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22540OsAffx.13634.1.S1_at1/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22550OsAffx.25192.1.S1_at11/113+12933425..12938180cation efflux family protein, putative
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5672.1.S1_at--702--5531Chr03:12930699..12930723 (25 bp)
GAAAAATCTCTTTATATGCAGCTAG
LOC_Os03g22540
Os.5672.1.S1_at--572--5951Chr03:12930745..12930767 (23 bp)
GAGAATAACCCTCGATCCCAAGTTT
LOC_Os03g22540
Os.5672.1.S1_at--180--6451Chr03:12930984..12931008 (25 bp)
GATCAGAATCTAACTCAGGCGGTTT
LOC_Os03g22540
Os.5672.1.S1_at--964--2651Chr03:12930999..12931023 (25 bp)
CAGGCGGTTTCTGAGAACTTGGCTA
LOC_Os03g22540
Os.5672.1.S1_at--1007--8271Chr03:12931019..12931043 (25 bp)
GGCTAGAGTCACCAAACAACGGAAT
LOC_Os03g22540
Os.5672.1.S1_at--1079--6971Chr03:12931044..12931068 (25 bp)
GTACCATGCAGCTGAGATACTCCAT
LOC_Os03g22540
Os.5672.1.S1_at--362--10171Chr03:12931144..12931168 (25 bp)
TATCAGATAGCATAAGCCCTCACCT
LOC_Os03g22540
Os.5672.1.S1_at--818--351Chr03:12931155..12931179 (25 bp)
ATAAGCCCTCACCTGTATATTGGAA
LOC_Os03g22540
Os.5672.1.S1_at--138--5711Chr03:12931183..12931207 (25 bp)
GACTAGGACTAACGGCTGAGCTCAT
LOC_Os03g22540
Os.5672.1.S1_at--793--4511Chr03:12931309..12931333 (25 bp)
GCCGCTTCTGGGAGAAATTTTACAT
LOC_Os03g22540
Os.5672.1.S1_at--318--9471Chr03:12931391..12931415 (25 bp)
TCTGTATTCTGGAGATTGGCACTGT
LOC_Os03g22540
Target Sequence 
GAAAAATCTCTTTATATGCAGCTAGTTCTGCTGTCAGAGAAATTCAGAGAATAACCCTCGATCCCAAGTTTAATCTAGAC
CTTAAATTCGAGGATCAGAATCTAACTCAGGCGGTTTCTGAGAACTTGGCTAGAGTCACCAAACAACGGAATGTACCATG
CAGCTGAGATACTCCATTTAAATTAGATATAGCAATTGTACATGTATTACATGGTGTCATATGAAAGGAACACAATGACA
CATTCTAATTGTTATCAGATAGCATAAGCCCTCACCTGTATATTGGAATTGGACTAGGACTAACGGCTGAGCTCATGTAA
ACAGAATAAACGTGGAGCAATTATTTAGCATTAGATTGTCAGAATGAGATTTACTGGGTTGCTTANAGACTGTCACTTTG
ATACAACTAATTCTTCTNGCCGCTTCTGGGAGAAATTTTACATCTGTTGACTGTTATTAAGTAACTTTGCTTAACATGTT
GAACTTGTTACAGTGAGCAATCTGTATTCTGGAGATTGGCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis