Browse Element(s) Details


OsAffx.25192.1.S1_at

Description tigr:9631.m02250
TID=OsAffx.25192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2255011/11cation efflux family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22510NANA3+12909096..12909630flowering promoting factor-like 1, putative, expressed
LOC_Os03g22519Os.51598.1.S1_s_at10/113+12916497..12917048expressed protein
LOC_Os03g22530NANA3+12920799..12921245Lichenase II precursor, putative
LOC_Os03g22540Os.5672.1.S1_at11/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22540OsAffx.13634.1.S1_at1/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22550OsAffx.25192.1.S1_at11/113+12933425..12938180cation efflux family protein, putative
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25192.1.S1_at--565--9991Chr03:12935129..12935153 (25 bp)
TAGCCATGGTAGCAGTGGGCATCAC
LOC_Os03g22550
OsAffx.25192.1.S1_at--148--571Chr03:12935178..12935202 (25 bp)
ATCCTTGCATTGAGTGTGACAGCTT
LOC_Os03g22550
OsAffx.25192.1.S1_at--875--2731Chr03:12935218..12935709 (25 bp)
AAGAAGGGCTCTATTGGATCACAAA
LOC_Os03g22550
OsAffx.25192.1.S1_at--951--9751Chr03:12935749..12935773 (25 bp)
TAATGCATGGCACCATCGCTCAGAT
LOC_Os03g22550
OsAffx.25192.1.S1_at--791--10311Chr03:12935778..12935802 (25 bp)
TTTCTTCTGTTGTTGCCCTATTAGG
LOC_Os03g22550
OsAffx.25192.1.S1_at--878--8111Chr03:12936171..12936195 (25 bp)
GGACTTGTTGTCTCGGGCATGATTC
LOC_Os03g22550
OsAffx.25192.1.S1_at--254--10771Chr03:12936745..12936769 (25 bp)
TTGATGCAGCTGTGGATCCATCGCT
LOC_Os03g22550
OsAffx.25192.1.S1_at--850--7631Chr03:12936942..12936966 (25 bp)
GGGACCTCCTTATATCTTGATGTAC
LOC_Os03g22550
OsAffx.25192.1.S1_at--305--9251Chr03:12937119..12937143 (25 bp)
TCCTTTCTTAAGTGTCAGTGCAGCA
LOC_Os03g22550
OsAffx.25192.1.S1_at--899--8051Chr03:12937155..12937179 (25 bp)
GGAGACTGTCCGTCATCAAATACAA
LOC_Os03g22550
OsAffx.25192.1.S1_at--1048--3211Chr03:12937192..12937216 (25 bp)
CAAGTTGCTGAGGTTTTCATACACA
LOC_Os03g22550
Target Sequence 
TAGCCATGGTAGCAGTGGGCATCACCATGGAATAGATTTGGAACATCCAATCCTTGCATTGAGTGTGACAGCTTTTGCAA
TATCTGTCAAAGAAGGGCTCTATTGGATCACAAAAAGAGCTGGAGAAAAGGAAGGGAGCGGGCTGATGAAAGCTAATGCA
TGGCACCATCGCTCAGATGCTATTTCTTCTGTTGTTGCCCTATTAGGGGTAGGTGGCTCCATTCTTGGAGTTCCTTATCT
TGATCCACTAGCTGGACTTGTTGTCTCGGGCATGATTCTTAAAGCTGGTGTTCATACTGGATATGAGAGTGTGCTGGAAC
TAGTTGATGCAGCTGTGGATCCATCGCTTCTACAACCAATCAAGGAAACAATTTTGCAGGTTGATGGTGTAAAGGGATGC
CATCGGTTGAGGGGAAGAAAAGCTGGGACCTCCTTATATCTTGATGTACACATTGAGGTATATCCTTTCTTAAGTGTCAG
TGCAGCACATGATATTGGGGAGACTGTCCGTCATCAAATACAAAAGTCACACAATCAAGTTGCTGAGGTTTTCATACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis