Browse Element(s) Details


OsAffx.13634.1.S1_at

Description tigr:9632.m00214
TID=OsAffx.13634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g225401/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22500OsAffx.25191.1.S1_at11/113+12905217..12906646hypothetical protein
LOC_Os03g22500Os.32925.1.S1_at1/113+12905217..12906646hypothetical protein
LOC_Os03g22510NANA3+12909096..12909630flowering promoting factor-like 1, putative, expressed
LOC_Os03g22519Os.51598.1.S1_s_at10/113+12916497..12917048expressed protein
LOC_Os03g22530NANA3+12920799..12921245Lichenase II precursor, putative
LOC_Os03g22540Os.5672.1.S1_at11/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22540OsAffx.13634.1.S1_at1/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22550OsAffx.25192.1.S1_at11/113+12933425..12938180cation efflux family protein, putative
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13634.1.S1_at--192--5172Chr03:12924850..12924874 (25 bp)
GCAAGCGCTCCGACGGCAAGCAGTG
LOC_Os03g22540
OsAffx.13634.1.S1_at--1044--2713Chr12:19288179..19288203 (25 bp)
AAGCAGTGGCGATGCTTTCCCATCT
NONE
OsAffx.13634.1.S1_at--809--1094Chr12:19288183..19288207 (25 bp)
AGTGGCGATGCTTTCCCATCTCCTG
NONE
OsAffx.13634.1.S1_at--878--6334Chr12:19288189..19288213 (25 bp)
GATGCTTTCCCATCTCCTGCAAACT
NONE
OsAffx.13634.1.S1_at--349--471Chr04:1251868..1251892 (25 bp)
ATCTCCTGCAAACTCGTGTTCACAT
NONE
OsAffx.13634.1.S1_at--553--3811Chr04:1251866..1251890 (25 bp)
CTCCTGCAAACTCGTGTTCACATTT
NONE
OsAffx.13634.1.S1_at--62--5151Chr04:1251861..1251885 (25 bp)
GCAAACTCGTGTTCACATTTACTCA
NONE
OsAffx.13634.1.S1_at--626--2511Chr04:1251858..1251882 (25 bp)
AACTCGTGTTCACATTTACTCAGAT
NONE
OsAffx.13634.1.S1_at--977--3991Chr04:1251854..1251878 (25 bp)
CGTGTTCACATTTACTCAGATCCTG
NONE
OsAffx.13634.1.S1_at--969--6751Chr04:1251851..1251875 (25 bp)
GTTCACATTTACTCAGATCCTGTCC
NONE
OsAffx.13634.1.S1_at--194--9691Chr04:1251849..1251873 (25 bp)
TCACATTTACTCAGATCCTGTCCGG
NONE
Target Sequence 
GCAAGCGCTCCGACGGCAAGCAGTGGCGATGCTTTCCCATCTCCTGCAAACTCGTGTTCACATTTACTCAGATCCTGTCC
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis