Browse Element(s) Details


Os.51598.1.S1_s_at

Description gb:AK063139.1
DB_XREF= gi:32973157
TID=Os.51598.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G06, full insert sequence.
FL= gb:AK063139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2251910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22500OsAffx.25191.1.S1_at11/113+12905217..12906646hypothetical protein
LOC_Os03g22500Os.32925.1.S1_at1/113+12905217..12906646hypothetical protein
LOC_Os03g22510NANA3+12909096..12909630flowering promoting factor-like 1, putative, expressed
LOC_Os03g22519Os.51598.1.S1_s_at10/113+12916497..12917048expressed protein
LOC_Os03g22530NANA3+12920799..12921245Lichenase II precursor, putative
LOC_Os03g22540Os.5672.1.S1_at11/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22540OsAffx.13634.1.S1_at1/113+12924804..12931469jmjC domain containing protein, expressed
LOC_Os03g22550OsAffx.25192.1.S1_at11/113+12933425..12938180cation efflux family protein, putative
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51598.1.S1_s_at--855--6191Chr03:12916926..12916950 (25 bp)
GAGGCTAGATAGGTACGAGTCCAGA
LOC_Os03g22519
Os.51598.1.S1_s_at--787--271Chr03:12916918..12916942 (25 bp)
ATAGGTACGAGTCCAGATCCGCCCT
LOC_Os03g22519
Os.51598.1.S1_s_at--226--4211Chr03:12916868..12916892 (25 bp)
CCCCAGATCTGTGGTGGCGGAGACC
LOC_Os03g22519
Os.51598.1.S1_s_at--927--9431Chr03:12916735..12916759 (25 bp)
TCGGTGGTGACGACGCGTGCTGGCA
LOC_Os03g22519
Os.51598.1.S1_s_at--61--5831Chr03:12916605..12916629 (25 bp)
GACCGCCTCTCTCCAGATCGATTTG
LOC_Os03g22519
Os.51598.1.S1_s_at--205--1271Chr03:12916591..12916615 (25 bp)
AGATCGATTTGCTTCCTGTAAAGGA
LOC_Os03g22519
Os.51598.1.S1_s_at--735--10791Chr03:12916565..12916589 (25 bp)
TTGTTGATGCATGCTGACTGCTGTG
LOC_Os03g22519
Os.51598.1.S1_s_at--253--3531Chr03:12916556..12916580 (25 bp)
CATGCTGACTGCTGTGAAATCGATT
LOC_Os03g22519
Os.51598.1.S1_s_at--195--5591Chr03:12916541..12916565 (25 bp)
GAAATCGATTTGCTTCCTGTGAAGG
LOC_Os03g22519
Os.51598.1.S1_s_at--143--9271Chr03:12916527..12916551 (25 bp)
TCCTGTGAAGGATTTGTTTATGTTA
LOC_Os03g22519
Os.51598.1.S1_s_at--856--10331Chr03:12916497..12916521 (25 bp)
TTTATGTGAGTCTGCTGATTTGTTG
NONE
Target Sequence 
GAGGCTAGATAGGTACGAGTCCAGATCCGCCCTCTCCTCTCCCAAATCCGCCATCTCCCCCCAGATCTGTGGTGGCGGAG
ACCGGGGAGGGGGCTCGGCGGCGGCGGCACGGGGTAGGGGCTCGGCAGTGGCAAGGGGACGGCGCTCAGCGGTGACGACG
CTCGGCGGCAGCGGATGGCGCGTGGTGGGTCTCGGTGGTGACGACGCGTGCTGGCAGCGGTGACGGCGCGCGGCTCTCTC
CTCTCTGTGCCTCCAACCTCCCACCTCCCTTCGCCTTTCTCCGGCTCTCCGGCTCGACAGCGACCGCAGCGACAGGACGG
CGACCGCCTCTCTCCAGATCGATTTGCTTCCTGTAAAGGATTTGTTGATGCATGCTGACTGCTGTGAAATCGATTTGCTT
CCTGTGAAGGATTTGTTTATGTTAATTTTTTTATGTGAGTCTGCTGATTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51598.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis