Browse Element(s) Details


Os.51334.1.S1_at

Description gb:AK062583.1
DB_XREF= gi:32972601
TID=Os.51334.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C12, full insert sequence.
FL= gb:AK062583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2258010/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22560OsAffx.12994.1.S1_at11/113+12940691..12944853expressed protein
LOC_Os03g22570Os.12595.1.S1_at10/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22570Os.30634.1.S1_at1/113+12954978..12967052MIF4G domain containing protein, expressed
LOC_Os03g22580Os.51334.1.S1_at10/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22580OsAffx.25193.1.S1_x_at9/113+12967773..12977499CW-type Zinc Finger family protein, expressed
LOC_Os03g22590Os.56004.1.S1_at11/113+12983522..12986948MtN3/saliva family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51334.1.S1_at--144--9591Chr03:12969048..12969072 (25 bp)
TCTTGGCAGTTGGTACGCAATTACT
LOC_Os03g22580
Os.51334.1.S1_at--840--6951Chr03:12969002..12969026 (25 bp)
GTAGAACCGGATTTTCATGCGTGAT
LOC_Os03g22580
Os.51334.1.S1_at--669--5471Chr03:12968972..12968996 (25 bp)
GAACTCTGGCAACCATTCTGCTGTA
LOC_Os03g22580
Os.51334.1.S1_at--731--10111Chr03:12968919..12968943 (25 bp)
TATGGGCTCCATATCAAGCATTCCC
LOC_Os03g22580
Os.51334.1.S1_at--206--7771Chr03:12968873..12968897 (25 bp)
GGTGAATCTTTGACTGACGCTTACT
LOC_Os03g22580
Os.51334.1.S1_at--652--2091Chr03:12968858..12968882 (25 bp)
GACGCTTACTTATACTAACTTCGAA
LOC_Os03g22580
Os.51334.1.S1_at--57--9851Chr03:12968717..12968741 (25 bp)
TAAATGGTTAGTCCTTCTCGTCTTT
LOC_Os03g22580
Os.51334.1.S1_at--623--10591Chr03:12968703..12968727 (25 bp)
TTCTCGTCTTTCCATGACATTTGGT
LOC_Os03g22580
Os.51334.1.S1_at--577--2811Chr03:12968634..12968658 (25 bp)
AAGATAAGTATTCTCCGTCTCCTCA
LOC_Os03g22580
Os.51334.1.S1_at--343--7171NONE
GTCTCCTCAAGCAGGTCTTACGAAA
NONE
Os.51334.1.S1_at--830--9151Chr03:12967788..12967812 (25 bp)
TGCGCATTGTCATTTACCCGAAACC
LOC_Os03g22580
Target Sequence 
TCTTGGCAGTTGGTACGCAATTACTGTGTGAACGGATCCAGCTGAGGTAGAACCGGATTTTCATGCGTGATGGTTTGAAC
TCTGGCAACCATTCTGCTGTAGGTAGGCAAATGTGTTTTATCGGGAACATATGGGCTCCATATCAAGCATTCCCCTGCCA
TGGTTCTATAGATTAGGTGAATCTTTGACTGACGCTTACTTATACTAACTTCGAAGCAGCATAATACCTTTTATTGGTGT
TACTGTGGGGCACTGATGATGTGCCAGCACTCAAGAACAATTTTGTAATTGGTAATTGGTAAGTTCCACCTGAGTATAAA
ATTCTGAAGGCTAAATGGTTAGTCCTTCTCGTCTTTCCATGACATTTGGTACAGTCTTGAGCAGGGGGGATGAGAGAAAT
GAGCTGTGCTAACCAAGATAAGTATTCTCCGTCTCCTCAAGCAGGTCTTACGAAATGGAACGGTTTGGAAGCATGGTGGG
CAATGAATTCTATAACCCTGTAAATCTCATGTACAGTAGAGATTAACCTGTTTGTTCATTACAGTAAACAGAACCAGCAC
CTGCGCATTGTCATTTACCCGAAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis