Browse Element(s) Details


Os.56974.1.S1_at

Description gb:AK110660.1
DB_XREF= gi:32995869
TID=Os.56974.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F01, full insert sequence.
FL= gb:AK110660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3305011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33030OsAffx.617.1.A1_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33030OsAffx.617.1.A1_x_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33040Os.46800.1.S1_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33040Os.46800.1.S2_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33050Os.56974.1.S1_at11/1110+16987465..16988532expressed protein
LOC_Os10g33060OsAffx.8033.1.S1_at11/1110+16990871..16992849Leucine Rich Repeat family protein
LOC_Os10g33070OsAffx.6844.1.S1_at11/1110+16995679..16996293hypothetical protein
LOC_Os10g33080OsAffx.20258.1.S1_at10/1110+17002072..17005527Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56974.1.S1_at--544--6651Chr10:16987968..16987992 (25 bp)
GTTGATGCTCCATCGTGCCAGCAAC
LOC_Os10g33050
Os.56974.1.S1_at--844--8351Chr10:16987919..16987943 (25 bp)
GGCGGATCCACCTGACGGAAGACTA
LOC_Os10g33050
Os.56974.1.S1_at--721--10031Chr10:16987896..16987920 (25 bp)
TAGATCCGGCTACGGCAGCATTGAA
LOC_Os10g33050
Os.56974.1.S1_at--196--4951Chr10:16987879..16987903 (25 bp)
GCATTGAATCTGTGGCCTACACGCT
LOC_Os10g33050
Os.56974.1.S1_at--109--3351Chr10:16987754..16987778 (25 bp)
CACGGTTCTCTGACAGCGGCGAGGA
LOC_Os10g33050
Os.56974.1.S1_at--687--6911Chr10:16987698..16987722 (25 bp)
GTAGGATTCGCCACCCAGGCGTGGA
LOC_Os10g33050
Os.56974.1.S1_at--1021--1051Chr10:16987665..16987689 (25 bp)
AGGGTGCTGCTTGGATTTGAGTTTT
LOC_Os10g33050
Os.56974.1.S1_at--189--1451Chr10:16987607..16987631 (25 bp)
AGAAGCATTGCCACTCATTTACAGC
LOC_Os10g33050
Os.56974.1.S1_at--617--2151Chr10:16987587..16987611 (25 bp)
ACAGCATCACATACATTTCCGTCAT
LOC_Os10g33050
Os.56974.1.S1_at--176--3591Chr10:16987574..16987598 (25 bp)
CATTTCCGTCATCCACTGAATATTC
LOC_Os10g33050
Os.56974.1.S1_at--1053--8111Chr10:16987521..16987545 (25 bp)
GGACTGCTGCAGTGAACAGTTCTTT
LOC_Os10g33050
Target Sequence 
GTTGATGCTCCATCGTGCCAGCAACTCCAACCAGATCTGGTTCAGAGGCGGCGGATCCACCTGACGGAAGACTAGATCCG
GCTACGGCAGCATTGAATCTGTGGCCTACACGCTGCGTCATCTTCCCAGCGATCCATGCGCCAAGCCACCTTCGTCACGC
TGAAGGCGAGGCGCCGCCAGGGTTCGGCCCCGCTGCCGCCATCCCGACTTGCCGCACGGTTCTCTGACAGCGGCGAGGAG
AGGGAGAGGGGAGAGCGGCGGCGGCGGGTGGTAGGATTCGCCACCCAGGCGTGGACGACACGGAGGGTGCTGCTTGGATT
TGAGTTTTTTTTTTTTTCATACATCATGTTGAACGAAAGAGCAGAAGCATTGCCACTCATTTACAGCATCACATACATTT
CCGTCATCCACTGAATATTCTTCTAATTCACATTCATAGAAGGAAAAGGGACTGCTGCAGTGAACAGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis