Browse Element(s) Details


Os.56993.1.S1_at

Description gb:AK110706.1
DB_XREF= gi:32995915
TID=Os.56993.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-C07, full insert sequence.
FL= gb:AK110706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4002011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40010OsAffx.14212.1.S1_at11/114+23596314..23597951hypothetical protein
LOC_Os04g40020Os.56993.1.S1_at11/114+23599462..23600314expressed protein
LOC_Os04g40030OsAffx.26400.1.S1_at11/114+23607513..23609887F-box domain containing protein, expressed
LOC_Os04g40040Os.9293.1.S1_at11/114+23610611..23617066Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56993.1.S1_at--497--3471Chr04:23600029..23600053 (25 bp)
CAGGGCAAAAGAGGCGCTCGCGCCT
LOC_Os04g40020
Os.56993.1.S1_at--965--5071Chr04:23600086..23600110 (25 bp)
GCAGCCGAGGCAGCGTTGAAGAGTT
LOC_Os04g40020
Os.56993.1.S1_at--571--2352Chr04:23600143..23600167 (25 bp)
AAAATATGGTTGTGGGTCCCACAAT
LOC_Os04g40020
Os.56993.1.S1_at--443--7231Chr04:23600158..23600182 (25 bp)
GTCCCACAATCCCACAGTTGGAGAG
LOC_Os04g40020
Os.56993.1.S1_at--703--531Chr04:23600166..23600190 (25 bp)
ATCCCACAGTTGGAGAGCCAGTTTT
LOC_Os04g40020
Os.56993.1.S1_at--243--8491Chr04:23600190..23600214 (25 bp)
TGGCTGGCCAAGTTTAGCCACCTAG
LOC_Os04g40020
Os.56993.1.S1_at--576--4371Chr04:23600196..23600220 (25 bp)
GCCAAGTTTAGCCACCTAGGGAGCC
LOC_Os04g40020
Os.56993.1.S1_at--753--10331Chr04:23600202..23600226 (25 bp)
TTTAGCCACCTAGGGAGCCCCTTTG
LOC_Os04g40020
Os.56993.1.S1_at--167--10871Chr04:23600224..23600248 (25 bp)
TTGGCCAACCAAATAGCTTCGAGAG
LOC_Os04g40020
Os.56993.1.S1_at--806--10631Chr04:23600241..23600265 (25 bp)
TTCGAGAGTAGGATAGCCAGTATGT
LOC_Os04g40020
Os.56993.1.S1_at--76--4431Chr04:23600256..23600280 (25 bp)
GCCAGTATGTTGGAGCTCGTTTTTT
LOC_Os04g40020
Target Sequence 
CAGGGCAAAAGAGGCGCTCGCGCCTCCGGTCCATTTCGGCGGAGGGCGGCGATGGAAGCAGCCGAGGCAGCGTTGAAGAG
TTTGGGGACAGAGAGAATGCGAGATGTGGGAAGAAAAATATGGTTGTGGGTCCCACAATCCCACAGTTGGAGAGCCAGTT
TTGGCTGGCCAAGTTTAGCCACCTAGGGAGCCCCTTTGGCCAACCAAATAGCTTCGAGAGTAGGATAGCCAGTATGTTGG
AGCTCGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis