Browse Element(s) Details


Os.9293.1.S1_at

Description gb:AK105824.1
DB_XREF= gi:32991033
TID=Os.9293.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.9293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-D10, full insert sequence.
FL= gb:AK059867.1 gb:AK119759.1 gb:AK105824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4004011/11Copper amine oxidase, enzyme domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40010OsAffx.14212.1.S1_at11/114+23596314..23597951hypothetical protein
LOC_Os04g40020Os.56993.1.S1_at11/114+23599462..23600314expressed protein
LOC_Os04g40030OsAffx.26400.1.S1_at11/114+23607513..23609887F-box domain containing protein, expressed
LOC_Os04g40040Os.9293.1.S1_at11/114+23610611..23617066Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9293.1.S1_at--227--5271Chr04:23611442..23611466 (25 bp)
GAATCCACGTATCCACGAGGGCTTA
LOC_Os04g40040
Os.9293.1.S1_at--804--4051Chr04:23611427..23611451 (25 bp)
CGAGGGCTTAGCTACCTGGGTCAAG
LOC_Os04g40040
Os.9293.1.S1_at--461--8411Chr04:23611395..23611419 (25 bp)
GGCCCCTGGAGGAAACTGACATTGT
LOC_Os04g40040
Os.9293.1.S1_at--545--591Chr04:23611050..23611072 (23 bp)
ATGCCACATGGGTTCTTCAACTGCT
LOC_Os04g40040
Os.9293.1.S1_at--257--2571Chr04:23610892..23610916 (25 bp)
AACTGTGGCATGTCACTGCTACGTA
LOC_Os04g40040
Os.9293.1.S1_at--865--9931Chr04:23610873..23610897 (25 bp)
TACGTATGCTTCTCGTCACTATATT
LOC_Os04g40040
Os.9293.1.S1_at--673--2331Chr04:23610838..23610862 (25 bp)
AAAGCTACTCCCATGGTGTTATTCC
LOC_Os04g40040
Os.9293.1.S1_at--1043--7411Chr04:23610823..23610847 (25 bp)
GTGTTATTCCTGTGTTCTGTACTGT
LOC_Os04g40040
Os.9293.1.S1_at--923--3871Chr04:23610807..23610831 (25 bp)
CTGTACTGTTATGACTTTCCTGCTG
LOC_Os04g40040
Os.9293.1.S1_at--137--4291Chr04:23610789..23610813 (25 bp)
CCTGCTGCGCTGTTTGATTTGTGAA
LOC_Os04g40040
Os.9293.1.S1_at--545--10831Chr04:23610771..23610795 (25 bp)
TTGTGAAATGTGTCCTGTTGCGCCA
LOC_Os04g40040
Target Sequence 
GAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGGT
ATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATG
CCACATGGGTTCTTCAACTGCTCGCCGGCGGTCGACGTGCCTCCCGGCTCCTCCGACGCTGACATCAAGGAAGCCGAGTC
GCCCAAAGNCATCCAGAACGGCCTCATCTCGAAGCTCTGAAGAGCTTTCCGCTGCTCTTCGTTTCGAAGAAATGCAACTG
TGGCATGTCACTGCTACGTATGCTTCTCGTCACTATATTGCCCCAAATAAAAGCTACTCCCATGGTGTTATTCCTGTGTT
CTGTACTGTTATGACTTTCCTGCTGCGCTGTTTGATTTGTGAAATGTGTCCTGTTGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis