Browse Element(s) Details


OsAffx.4035.1.S1_x_at

Description tigr:9632.m03805
TID=OsAffx.4035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=T04384 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4007011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40040Os.9293.1.S1_at11/114+23610611..23617066Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4035.1.S1_x_at--990--7271Chr04:23642388..23642412 (25 bp)
GTGCCACTGTCAAAGGAGTATACTT
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--366--6891Chr04:23642405..23642429 (25 bp)
GTATACTTTGGAACTGCCTATCGAT
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--614--831Chr04:23642533..23642557 (25 bp)
ATGGATGTGAATTTTCATCCCTCGA
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--154--10551Chr04:23642546..23643044 (25 bp)
TTCATCCCTCGAGGGCGGATCTGCT
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--867--8051Chr04:23643150..23643174 (25 bp)
GGAGCGGCACGCCAGCTACAAGTTC
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--651--9871Chr04:23643181..23643205 (25 bp)
TACATGTCCATCTTCGGCGGCGAGG
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--264--9531Chr04:23643257..23643281 (25 bp)
TCTACGACGTCATCACGCTGCGCAA
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--688--2051Chr04:23643296..23643712 (25 bp)
ACTTCTTCCGGTTGCATTTGAGGCA
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--1019--191Chr04:23643703..23643727 (25 bp)
ATTTGAGGCACAACATATGGAGCGT
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--1039--5351Chr04:23643818..23643842 (25 bp)
GAAGAGGATCGCGAGGAACATCTGC
LOC_Os04g40070
OsAffx.4035.1.S1_x_at--313--2511Chr04:23643834..23643858 (25 bp)
AACATCTGCGAGAAGCTGGCGCACA
LOC_Os04g40070
Target Sequence 
GTGCCACTGTCAAAGGAGTATACTTTGGAACTGCCTATCGATTGGAAGAGGCTAGATAAGTTATACAGTACTTGTGTAAA
CATGGATGTGAATTTTCATCCCTCGAGGGCGGATCTGCTGATGGGGGTGTTCGACGGGGGCCCCCTGGAGGCGAAGGCGA
TGAGCAGGGCGGGTTGCCTCGACTACGCCGCCACCCCGTGGCAGGACGCCCGGCCCGGCGTCCTGGAGCGGCACGCCAGC
TACAAGTTCAACCGCTACATGTCCATCTTCGGCGGCGAGGTCGTCAGCACCCAGCTCAGGCTCCCCTCCGACGACGGCGA
CGGCTGGACCGTCTACGACGTCATCACGCTGCGCAACGTCCCCTTCGGCGACTTCTTCCGGTTGCATTTGAGGCACAACA
TATGGAGCGTGGAGGCCGCGTCGTCGGAGGCGGCGGCGAGCAGCGGGAGCCGGTGCGAGATACTGGTGGGGATCGAGTGG
GTGAAGAGGAGCAAGTTCCAGAAGAGGATCGCGAGGAACATCTGCGAGAAGCTGGCGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4035.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis