Browse Element(s) Details


Os.6250.1.S1_at

Description gb:AK071870.1
DB_XREF= gi:32981893
TID=Os.6250.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116G14, full insert sequence.
FL= gb:AK071870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4008011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6250.1.S1_at--160--10311Chr04:23647589..23647613 (25 bp)
TTTCTATGCCGCCAATGGAGATCGT
LOC_Os04g40080
Os.6250.1.S1_at--1060--2791Chr04:23647820..23647844 (25 bp)
AAGATGCCTACCTGGATCAGCAGTA
LOC_Os04g40080
Os.6250.1.S1_at--169--7011Chr04:23647842..23647866 (25 bp)
GTACTGAAAGCGCTCACCTGTGTGG
LOC_Os04g40080
Os.6250.1.S1_at--232--3371Chr04:23647856..23647880 (25 bp)
CACCTGTGTGGTGTTTGTGCACCGT
LOC_Os04g40080
Os.6250.1.S1_at--427--3991Chr04:23647878..23647902 (25 bp)
CGTGTACATACTATAAGCGTTCCAT
LOC_Os04g40080
Os.6250.1.S1_at--523--3531Chr04:23647900..23647924 (25 bp)
CATGCTTACCATCTCATCTGGGAAA
LOC_Os04g40080
Os.6250.1.S1_at--841--10391Chr04:23647929..23647953 (25 bp)
TTTTGTGTTCCTGGTGAGTCGAGCC
LOC_Os04g40080
Os.6250.1.S1_at--1048--331Chr04:23647954..23647978 (25 bp)
ATACACTCGTGCTAGGCTTGCATCC
LOC_Os04g40080
Os.6250.1.S1_at--539--9811Chr04:23648014..23648038 (25 bp)
TAACTTCCGGACGTCCTTTTCATAG
LOC_Os04g40080
Os.6250.1.S1_at--15--7271Chr04:23648026..23648050 (25 bp)
GTCCTTTTCATAGCTTCACTTGTTA
LOC_Os04g40080
Os.6250.1.S1_at--174--271Chr04:23648091..23648115 (25 bp)
ATATGACCGGAGAGTGCGCTCAAGA
LOC_Os04g40080
Target Sequence 
TTTCTATGCCGCCAATGGAGATCGTGAACAAAGGCGTGGACGCGGTGAAAGAATACATGTTGCAGAGGTGGCTTGACATC
TTGCTCGAGGAAGAACGGAAGAGCATCGCANGCANCGGAGAGCCCTCAAGCACCGACCACTCCTTCGGCCTGGCTGGCAC
NCAGCGTCTCCTGGGTCTCCGACGTTTCCGGAAGCCTTGTGGGGTACCTCAGTGGCGAGAACAAGACGGAGAAAGATGCC
TACCTGGATCAGCAGTACTGAAAGCGCTCACCTGTGTGGTGTTTGTGCACCGTGTACATACTATAAGCGTTCCATGCTTA
CCATCTCATCTGGGAAAATCNTTTTGTGTTCCTGGTGAGTCGAGCCATACACTCGTGCTAGGCTTGCATCCCCCAAANCA
GGCTTTGGGGTTTATTTTGCCCGTTTTAACTTCCGGACGTCCTTTTCATAGCTTCACTTGTTACAGTANTANANTACTTT
GTCGAATAATAATGTGGAGACAAATATGACCGGAGAGTGCGCTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis