Browse Element(s) Details


Os.21022.1.S1_at

Description gb:AK067981.1
DB_XREF= gi:32977999
TID=Os.21022.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126J03, full insert sequence.
FL= gb:AK067981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4010010/11NPH3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21022.1.S1_at--937--3331Chr04:23659308..23659332 (25 bp)
CACTGGCAGGCCAAGAACGACGGAG
LOC_Os04g40100
Os.21022.1.S1_at--484--6211Chr04:23659483..23659507 (25 bp)
GAGGCGTTCGTGCATAGGACGCGCG
LOC_Os04g40100
Os.21022.1.S1_at--429--8431Chr04:23659582..23659606 (25 bp)
TGGCCGACGAGCAGAACCTTCACCT
LOC_Os04g40100
Os.21022.1.S1_at--101--2351Chr04:23659630..23659654 (25 bp)
AAAGCTGATCCGTACATACCGTGTA
LOC_Os04g40100
Os.21022.1.S1_at--582--311Chr04:23659645..23659669 (25 bp)
ATACCGTGTACAAATATGCTTGAAT
LOC_Os04g40100
Os.21022.1.S1_at--982--9351Chr04:23659691..23659715 (25 bp)
TCGAGATTTGATTTTGTTCCAACTA
LOC_Os04g40100
Os.21022.1.S1_at--623--6531Chr04:23659700..23659724 (25 bp)
GATTTTGTTCCAACTAGTTCTTGAA
LOC_Os04g40100
Os.21022.1.S1_at--1003--6671Chr04:23659706..23659730 (25 bp)
GTTCCAACTAGTTCTTGAAGTTTGG
LOC_Os04g40100
Os.21022.1.S1_at--597--6631NONE
GTTGTGTGCACTGATATGACTGCGT
NONE
Os.21022.1.S1_at--573--8831Chr04:23659747..23659770 (24 bp)
TGATATGACTGCGTGTACACTCCCT
LOC_Os04g40100
Os.21022.1.S1_at--846--8491Chr04:23659808..23659832 (25 bp)
TGAACAAGGGTTTATCCAAATTAAT
LOC_Os04g40100
Target Sequence 
CACTGGCAGGCCAAGAACGACGGAGGAGAACGGCAAGGACGGGCAGAGCCCCGCCGCCGCCGGGAGCGTGGCGGCGGACG
GCGACTGGAGCGTGGAGGGGCTGAGGCGCGCGGCGTCGAGGGTGGCGNCGCTGAAGATGAGGCTGGAGGAGGAGGACGGC
GAGGACGCCGGCGACGAGGCGTTCGTGCATAGGACGCGCGCGGGGTTGGCACGGAGCGCGTCGTCGCGTNTCACGGCGGC
GGCGGGGAGGTCCAAGCGGATGCTGAGCAGGCTNTGGCCGACGAGCAGAACCTTCACCTAAGGGGCATCNAGACACTTGN
NNNNNAGCAAAGCTGATCCGTACATACCGTGTACAAATATGCTTGAATTTGTAAGTAAAATTTNTTCCNTCGAGATTTGA
TTTTGTTCCAACTAGTTCTTGAAGTTTGGGGAAGTTGTGTGCACTGATATGACTGCGTGTACACTCCCTCCATTTAAAAA
AATACATTTTGTAAGGACGAATATGAACAAGGGTTTATCCAAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis