Browse Element(s) Details


Os.57036.1.S1_at

Description gb:AK110788.1
DB_XREF= gi:32995997
TID=Os.57036.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C09, full insert sequence.
FL= gb:AK110788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3858011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38510OsAffx.29590.1.S1_at11/118+24231512..24231967hypothetical protein
LOC_Os08g38520OsAffx.29591.1.S1_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38520OsAffx.29591.1.S1_x_at11/118+24233129..24233974F-box domain containing protein
LOC_Os08g38530Os.15237.1.S1_at3/118+24234688..24236129hypothetical protein
LOC_Os08g38540OsAffx.17405.1.S1_at10/118+24237384..24239114hypothetical protein
LOC_Os08g38550OsAffx.6070.1.S1_at9/118+24239968..24243475hypothetical protein
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein
LOC_Os08g38630OsAffx.17407.1.S1_at11/118+24281436..24282002hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57036.1.S1_at--464--8451Chr08:24257042..24257066 (25 bp)
TGGCGGCGAACGTGTCCAACCCCAA
LOC_Os08g38580
Os.57036.1.S1_at--1133--1711Chr08:24257018..24257042 (25 bp)
ACCAGAAGATGGACGTGGTGTTCCG
LOC_Os08g38580
Os.57036.1.S1_at--125--1151Chr08:24256910..24256934 (25 bp)
AGTCGCAGATCATCAGCGTGCACAT
LOC_Os08g38580
Os.57036.1.S1_at--993--1631Chr08:24256896..24256920 (25 bp)
AGCGTGCACATGGTGTCCAGCCAGG
LOC_Os08g38580
Os.57036.1.S1_at--537--5091Chr08:24256796..24256820 (25 bp)
GCACGTTCAAGGTCCAGGCCAAGCT
LOC_Os08g38580
Os.57036.1.S1_at--25--891Chr08:24256781..24256805 (25 bp)
AGGCCAAGCTCTGGTTCTGGCACTA
LOC_Os08g38580
Os.57036.1.S1_at--558--8511Chr08:24256764..24256788 (25 bp)
TGGCACTACACCTACTCGATGTCGG
LOC_Os08g38580
Os.57036.1.S1_at--766--4051Chr08:24256748..24256772 (25 bp)
CGATGTCGGCGCTCTGTGACCTGGA
LOC_Os08g38580
Os.57036.1.S1_at--723--4791Chr08:24256716..24256740 (25 bp)
GCTCCTCCCTGTGGTGTTCTTGTTG
LOC_Os08g38580
Os.57036.1.S1_at--758--6671Chr08:24256695..24256719 (25 bp)
GTTGCTAGGAGATGCATCACAAGGT
LOC_Os08g38580
Os.57036.1.S1_at--729--6531Chr08:24256645..24256669 (25 bp)
GATTTAGGGATTCAGATTTCTTCTT
LOC_Os08g38580
Target Sequence 
TGGCGGCGAACGTGTCCAACCCCAACCAGAAGATGGACGTGGTGTTCCGGTCGGCCGCCGTGGAGCTCTTCTTCGGCGGC
CGGCGGATGGCGGCGCAGGCGCTGCCGGCGCCGTTCGTGCAGCGGCGGGGGCAGTCGCAGATCATCAGCGTGCACATGGT
GTCCAGCCAGGTGGCGCTGCCGCCGGAGCTCGCCGTGGCGATGGTGAACCAGGTGAGGAGCAACAGGGTGGTGTACACCA
TCAGGGGCACGTTCAAGGTCCAGGCCAAGCTCTGGTTCTGGCACTACACCTACTCGATGTCGGCGCTCTGTGACCTGGAG
CTCACTGCTCCTCCCTGTGGTGTTCTTGTTGCTAGGAGATGCATCACAAGGTGACTGATGATGATGATGATGATGATGAT
TTAGGGATTCAGATTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis