Browse Element(s) Details


Os.57098.1.S1_at

Description gb:AK110917.1
DB_XREF= gi:32996126
TID=Os.57098.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C09, full insert sequence.
FL= gb:AK110917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5012011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed
LOC_Os01g50090NANA1+29109928..29112744retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50100Os.11800.1.S1_s_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.39411.1.A1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.11800.1.S1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50110Os.55528.1.S1_at11/111+29123363..29124496Myb-related protein Zm38, putative, expressed
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50140NANA1+29135092..29135604transposon protein, putative, unclassified
LOC_Os01g50149Os.36511.1.S1_at1/111+29150447..29150624NA
LOC_Os01g50160Os.9066.1.S1_s_at11/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50160Os.49647.1.S1_at8/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57098.1.S1_at--157--6811Chr01:29127521..29127545 (25 bp)
GTTTTGATTTCACTGCACATAGCTT
LOC_Os01g50120
Os.57098.1.S1_at--331--3171Chr01:29127596..29127620 (25 bp)
AATTGTTTATTGTCTACCTGCCTCT
LOC_Os01g50120
Os.57098.1.S1_at--127--3831Chr01:29127613..29127637 (25 bp)
CTGCCTCTTTGCTTGTATACCTAAA
LOC_Os01g50120
Os.57098.1.S1_at--1004--1011Chr01:29127770..29127794 (25 bp)
AGGTTACCCACACATGTGCATGCTT
LOC_Os01g50120
Os.57098.1.S1_at--504--7331Chr01:29127785..29127809 (25 bp)
GTGCATGCTTTAGTGTCTGTTTAAC
LOC_Os01g50120
Os.57098.1.S1_at--524--3131Chr01:29127877..29127901 (25 bp)
AATTTTCCAATGATGTCCGCAAGAG
LOC_Os01g50120
Os.57098.1.S1_at--232--7411Chr01:29127901..29127925 (25 bp)
GTGATCTTTCCACACTTTGCAAGGC
LOC_Os01g50120
Os.57098.1.S1_at--235--771Chr01:29127958..29127982 (25 bp)
ATGTCTTTGTCATCGATCTTTCCTA
LOC_Os01g50120
Os.57098.1.S1_at--707--4031Chr01:29127971..29127995 (25 bp)
CGATCTTTCCTATCTCTTTGAGTTT
LOC_Os01g50120
Os.57098.1.S1_at--2--1431Chr01:29128003..29128027 (25 bp)
AGAAAGTCCGATTTGCTGTGGCATA
LOC_Os01g50120
Os.57098.1.S1_at--841--8111Chr01:29128051..29128075 (25 bp)
GGACTGGATAACTGCCTTGAATACA
LOC_Os01g50120
Target Sequence 
GTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATGAGACGATCTTATGATTCTTTAATATCAATTG
TTTATTGTCTACCTGCCTCTTTGCTTGTATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGC
TGAAGTTATGATTGAATTCATTCAACCAGCACATGGACTTTTACTTCTAACCAAGAAACAGAGTACTTCGAATAGCGAGG
TTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTAACAAAGTATAAGACAGCAACTATCACTATGATA
TCAGGTATTCATATACATTCTGTAAATCATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGC
AAGGCCAAGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCTTTGAGTTTGTAGA
TCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAGTTAGGACTGGATAACTGCCTTGAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis