Browse Element(s) Details


Os.57107.1.S1_at

Description gb:AK110929.1
DB_XREF= gi:32996138
TID=Os.57107.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D11, full insert sequence.
FL= gb:AK110929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3764010/11Xyloglucan fucosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57107.1.S1_at--904--4051Chr04:22162811..22162835 (25 bp)
CGAGTACTACGAGAGGATCAGGGAC
LOC_Os04g37640
Os.57107.1.S1_at--136--5811Chr04:22162756..22162780 (25 bp)
GACGCGGTGAGCGTATTCCAGCCGA
LOC_Os04g37640
Os.57107.1.S1_at--329--3971Chr04:22162584..22162608 (25 bp)
CGTGGGTGCTCATGGTCCCCGTCCG
LOC_Os04g37640
Os.57107.1.S1_at--50--3731Chr04:22162490..22162514 (25 bp)
CTACGACTGCCAGGCGAGGACCAAA
LOC_Os04g37640
Os.57107.1.S1_at--862--4031Chr04:22162476..22162500 (25 bp)
CGAGGACCAAAGGTGACAACGGCAA
LOC_Os04g37640
Os.57107.1.S1_at--432--3951Chr04:22162435..22162459 (25 bp)
CGGCACTGCGAGGACCTCAAGGATG
LOC_Os04g37640
Os.57107.1.S1_at--698--31Chr04:22162403..22162427 (25 bp)
ATTGGTGGACTGAGTTGCATTCCAT
LOC_Os04g37640
Os.57107.1.S1_at--622--5731Chr04:22162396..22162420 (25 bp)
GACTGAGTTGCATTCCATTGTCCCT
LOC_Os04g37640
Os.57107.1.S1_at--893--3331Chr04:22162356..22162380 (25 bp)
CACTGTTCTTCACTTGTTTGTTGTT
LOC_Os04g37640
Os.57107.1.S1_at--850--3651Chr04:22162349..22162373 (25 bp)
CTTCACTTGTTTGTTGTTAAAGCAT
LOC_Os04g37640
Os.57107.1.S1_at--198--2751Chr04:22162267..22162291 (25 bp)
AAGAAACTTTGCACATTAGCAAGAC
NONE
Target Sequence 
CGAGTACTACGAGAGGATCAGGGACATGTACTACGAGCACGGCGCGGCGGGCGGGGACGCGGTGAGCGTATTCCAGCCGA
CGCACCTGGGCGGGCAGCGGTCGGAGGAGCGGATGCACAACCAGAAGGCGCTCGCCGAGATGATGCTGCTCAGCTTCTCC
GACGTGGCGCTCACGTCGGCCGCCTCGACGTTCGGGTACGTCAGCCACGGGCTGGCCGGGCTGAGGCCGTGGGTGCTCAT
GGTCCCCGTCCGCAAGAAGGCGCCCAACCCGCCGTGCCGGCTAGCCGCCACCGTCGAGCCGTGCTTCCACACACCGCCGC
ACTACGACTGCCAGGCGAGGACCAAAGGTGACAACGGCAAGACGGTCCGGCACGTCCGGCACTGCGAGGACCTCAAGGAT
GGTGTTCAATTGGTGGACTGAGTTGCATTCCATTGTCCCTCCGCCTGTCCATCTGCACTGTTCTTCACTTGTTTGTTGTT
AAAGCATTAAGAAAACATTTACTGAATTGTAATCAAGTTTGTATGATATGATATTTCTCAAGATAAGAAACTTTGCACAT
TAGCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis