Browse Element(s) Details


Os.57176.1.S1_at

Description gb:AK111084.1
DB_XREF= gi:32996293
TID=Os.57176.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F07, full insert sequence.
FL= gb:AK111084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0762010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57176.1.S1_at--1137--4011Chr01:3662293..3662317 (25 bp)
CGTCTGCGTCGAGTTATCGGAGGAA
LOC_Os01g07620
Os.57176.1.S1_at--866--9191Chr01:3662153..3662177 (25 bp)
TCCAATCCGCTGCACAATTTGCGAT
LOC_Os01g07620
Os.57176.1.S1_at--419--10271Chr01:3662136..3662160 (25 bp)
TTTGCGATGACGCAGCGTTTCTTCT
LOC_Os01g07620
Os.57176.1.S1_at--1106--4631Chr01:3662122..3662146 (25 bp)
GCGTTTCTTCTCAAATCGAATTCAG
LOC_Os01g07620
Os.57176.1.S1_at--639--811Chr01:3662060..3662084 (25 bp)
ATGGTGGCGACTGTATGTATGATCA
LOC_Os01g07620
Os.57176.1.S1_at--211--7431Chr01:3661980..3662004 (25 bp)
GTGTTAACATGTCTCATTCTCTGCT
LOC_Os01g07620
Os.57176.1.S1_at--467--111Chr01:3661965..3661989 (25 bp)
ATTCTCTGCTCTCGAAGTCTCAAGA
LOC_Os01g07620
Os.57176.1.S1_at--683--5671Chr01:3661942..3661966 (25 bp)
GACTTGATTCTTCTTACTGGGTGTG
LOC_Os01g07620
Os.57176.1.S1_at--253--10111Chr01:3661906..3661930 (25 bp)
TATGGCGGTGTGTGGCTAGCAATAT
LOC_Os01g07620
Os.57176.1.S1_at--546--171Chr01:3661858..3661882 (25 bp)
ATTTTCCATATACTTGTAGCCGTGT
LOC_Os01g07620
Os.57176.1.S1_at--964--8751Chr01:3661844..3661868 (25 bp)
TGTAGCCGTGTTCAATTGTTTGTTC
NONE
Target Sequence 
CGTCTGCGTCGAGTTATCGGAGGAACCGGAGGAGGATGGAGGGCGGTCTCGCCGCCGCCGCCGTCGCCTTCCACGCGAGG
AGGTTCCGGCCGCACGGCGGCGGCGGATTTGAGGCCGACAAGAGGCTGGCGCCGACGGGCTCCAATCCGCTGCACAATTT
GCGATGACGCAGCGTTTCTTCTCAAATCGAATTCAGAGAGTTTTGCAGGCTGCTGATGAGATTGTTGTTGATGATGGTGG
CGACTGTATGTATGATCAGATTTTGGCTCTTCTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAA
CATGTCTCATTCTCTGCTCTCGAAGTCTCAAGACTTGATTCTTCTTACTGGGTGTGTTCTTGATAAGTATGGCGGTGTGT
GGCTAGCAATATACTCGTATACATACGTATTCTACATTTTCCATATACTTGTAGCCGTGTTCAATTGTTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis