Browse Element(s) Details


Os.5724.1.S1_at

Description gb:AK062542.1
DB_XREF= gi:32972560
TID=Os.5724.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G03, full insert sequence.
FL= gb:AK062542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1066011/11LysM domain GPI-anchored protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10629NANA6+5533562..5534029NA
LOC_Os06g10640Os.50619.1.S1_x_at1/116+5539757..5540670hypothetical protein
LOC_Os06g10650Os.27916.1.S1_at11/116+5554008..5558137tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os06g10660Os.5724.1.S1_at11/116+5558910..5562098LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os06g10670NANA6+5568911..5570472Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g10680OsAffx.4791.1.S1_at10/116+5571600..5572851hypothetical protein
LOC_Os06g10690Os.9899.1.S1_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10690Os.9899.1.S2_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10700NANA6+5585612..5585902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5724.1.S1_at--936--5151Chr06:5560653..5560677 (25 bp)
GCAACCTCATGCTTGGGAATGTGAC
LOC_Os06g10660
Os.5724.1.S1_at--775--3371Chr06:5560687..5560711 (25 bp)
CACCAGTGGTGGATGCAATGTCTCA
LOC_Os06g10660
Os.5724.1.S1_at--1140--2971Chr06:5560703..5560727 (25 bp)
AATGTCTCATCTTGCAGCTATGCTG
LOC_Os06g10660
Os.5724.1.S1_at--271--2011Chr06:5561609..5561633 (25 bp)
ACTCAGGGCGACACCAATTGCAGTA
LOC_Os06g10660
Os.5724.1.S1_at--5--8091Chr06:5561710..5561734 (25 bp)
GGAGCTCCAACGTTTCTCCTGCAAA
LOC_Os06g10660
Os.5724.1.S1_at--995--5131Chr06:5561730..5561754 (25 bp)
GCAAACGGCCCTTCTGGGAGTGTCT
LOC_Os06g10660
Os.5724.1.S1_at--218--2671Chr06:5561758..5561782 (25 bp)
AAGCGGCTTCGGTGAATCGGCCACA
LOC_Os06g10660
Os.5724.1.S1_at--1036--10591Chr06:5561804..5561828 (25 bp)
TTCTGTAGCCTTGTACTTCCAGATG
LOC_Os06g10660
Os.5724.1.S1_at--413--1611Chr06:5561950..5561975 (25 bp)
AGCGATCCAATTCTTAATGCGTCAA
LOC_Os06g10660
Os.5724.1.S1_at--938--571Chr06:5561968..5561991 (24 bp)
ATGCGTCAAACGGAAGCCCCAATTG
LOC_Os06g10660
Os.5724.1.S1_at--953--8311Chr06:5561993..5562017 (25 bp)
GGCGGGCTTATTCAGTTTGTAACCA
LOC_Os06g10660
Target Sequence 
GCAACCTCATGCTTGGGAATGTGACTGCCCAATCCACCAGTGGTGGATGCAATGTCTCATCTTGCAGCTATGCTGGACTT
GTTAATGGAACCATTGCCACNNNGCTCTCCTCTGGTCTTCAACCCACATGCCCAGGACCACATCAGTTCCCCCCACTCAG
GGCGACACCAATTGCAGTAAACCAAGGATCATACCTTGCTCCATCACCTGCNCCAGGAGCTGGGGAGGCTGGCGGCGATA
TTCCGGGCTTCCCTGGGAGCTCCAACGTTTCTCCTGCAAACGGCCCTTCTGGGAGTGTCTCCCAAGCGGCTTCGGTGAAT
CGGCCACACCAAATCGTCGCCCTCATTCTTTCTGTAGCCTTGTACTTCCAGATGTGAATTCGTGTGCAGAGTATTGTTGT
TGTTGCTGGCTGTGTGTATTGAACAGGGGGCCCTCATTTGGGCCTGGTGGAACCCTAATGTCAAGGTCCTTTCTATCGCN
NNNNNNNNNTNTNGCAGCGATCCAATTCTTAATGCGTCAAACGGAAGCCCCAATTGGGGCGGGCTTATTCAGTTTGTAAC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis