Browse Element(s) Details


Os.57294.1.S1_at

Description gb:AK111251.1
DB_XREF= gi:32996460
TID=Os.57294.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E01, full insert sequence.
FL= gb:AK111251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1615010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16100OsAffx.16289.1.S1_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_x_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16110OsAffx.17914.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.2606.1.S1_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.1436.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16120OsAffx.20387.1.S1_x_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.4941.1.S1_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.29419.3.S1_at1/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16130Os.52325.1.S1_at11/117+9393670..9395830acetyltransferase, GNAT family protein, expressed
LOC_Os07g16140Os.27668.1.S1_at11/117+9397725..9402050expressed protein
LOC_Os07g16150Os.57294.1.S1_at10/117+9404144..9405448expressed protein
LOC_Os07g16160NANA7+9419714..9421604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16170Os.50619.1.S1_at1/117+9423694..9425092hypothetical protein
LOC_Os07g16180OsAffx.28474.1.S1_at11/117+9428038..9428277hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57294.1.S1_at--76--4531Chr07:9404226..9404351 (25 bp)
GCCGCTACGGATGGATCTTCGACGA
LOC_Os07g16150
Os.57294.1.S1_at--79--291NONE
ATCTTCGACGAGTGGACGGACCCCG
NONE
Os.57294.1.S1_at--1148--9631Chr07:9405097..9405121 (25 bp)
TCAGTTAGTCAAGCTCTCGAGCGCT
LOC_Os07g16150
Os.57294.1.S1_at--50--9511Chr07:9405111..9405135 (25 bp)
TCTCGAGCGCTGTGGAACCTCATCT
LOC_Os07g16150
Os.57294.1.S1_at--740--9291Chr07:9405150..9405174 (25 bp)
TCCGCCCCTATCATTGCACAGGAAG
LOC_Os07g16150
Os.57294.1.S1_at--1022--6751Chr07:9405228..9405252 (25 bp)
GTTAATACCCTGCAGAACTATGTGC
LOC_Os07g16150
Os.57294.1.S1_at--1104--1491Chr07:9405268..9405292 (25 bp)
AGCACTGATGGCCACTGATTGACAA
LOC_Os07g16150
Os.57294.1.S1_at--780--6591Chr07:9405284..9405308 (25 bp)
GATTGACAAGGCAGTGGTATCACCA
LOC_Os07g16150
Os.57294.1.S1_at--144--7871Chr07:9405299..9405323 (25 bp)
GGTATCACCAATTGAATGCCGAGCT
LOC_Os07g16150
Os.57294.1.S1_at--841--7031Chr07:9405367..9405391 (25 bp)
GTACAATGTCATCGTGGAGCCCTTT
LOC_Os07g16150
Os.57294.1.S1_at--753--5871Chr07:9405383..9405407 (25 bp)
GAGCCCTTTGTCTGTGACTCTCTTT
LOC_Os07g16150
Target Sequence 
GCCGCTACGGATGGATCTTCGACGAGTGGACGGACCCCGCAGACGCCGCCCTCGCCGGAGGCAGGGGGATGTTCTGCGTG
CTGCCGATGGCGCGGTCGCTGGTGGACGTCGCCGTGTCCTCGGTTACCTATGCAGNAGACTCAGTTAGTCAAGCTCTCGA
GCGCTGTGGAACCTCATCTCNCATAGCATATCTTCCGCCCCTATCATTGCACAGGAAGCAACAAACATGGTTTCGTGAAC
TTGAGCATGTTGGAGTTATAGCTGATACAAAGTTAATACCCTGCAGAACTATGTGCAGCTTGGGGTGTATCAGCACTGAT
GGCCACTGATTGACAAGGCAGTGGTATCACCAATTGAATGCCGAGCTNCTGTTTACAATACGTTAGTTCAGTTTCGGAAA
TGTCAAATTCGTACAATGTCATCGTGGAGCCCTTTGTCTGTGACTCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis