Browse Element(s) Details


Os.52325.1.S1_at

Description gb:AK066403.1
DB_XREF= gi:32976421
TID=Os.52325.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062A11, full insert sequence.
FL= gb:AK104697.1 gb:AK066403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1613011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16070OsAffx.5345.1.S1_at11/117+9367436..9370474hypothetical protein
LOC_Os07g16070OsAffx.31070.1.S1_x_at1/117+9367436..9370474hypothetical protein
LOC_Os07g16080NANA7+9371282..9371701retrotransposon protein, putative, unclassified
LOC_Os07g16090Os.40855.5.S1_x_at11/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_at9/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_x_at8/117+9375387..9378722hypothetical protein
LOC_Os07g16090OsAffx.15821.2.S1_at4/117+9375387..9378722hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_x_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16110OsAffx.17914.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.2606.1.S1_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.1436.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16120OsAffx.20387.1.S1_x_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.4941.1.S1_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.29419.3.S1_at1/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16130Os.52325.1.S1_at11/117+9393670..9395830acetyltransferase, GNAT family protein, expressed
LOC_Os07g16140Os.27668.1.S1_at11/117+9397725..9402050expressed protein
LOC_Os07g16150Os.57294.1.S1_at10/117+9404144..9405448expressed protein
LOC_Os07g16160NANA7+9419714..9421604retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52325.1.S1_at--682--4351Chr07:9395181..9395205 (25 bp)
CCAGATATCTGAGGCGCCATTCGAG
LOC_Os07g16130
Os.52325.1.S1_at--982--5771Chr07:9395275..9395299 (25 bp)
GACGAGTACCTCTATGTGTCAGGAA
LOC_Os07g16130
Os.52325.1.S1_at--900--9611Chr07:9395293..9395317 (25 bp)
TCAGGAATTGCGGTGTTGCCATCCT
LOC_Os07g16130
Os.52325.1.S1_at--887--4131Chr07:9395447..9395471 (25 bp)
CGCTCCAGTGGAGGCACAGATTCAT
LOC_Os07g16130
Os.52325.1.S1_at--482--6571Chr07:9395465..9395489 (25 bp)
GATTCATGGCGCTGAGGGCTTACAA
LOC_Os07g16130
Os.52325.1.S1_at--1039--971Chr07:9395575..9395599 (25 bp)
AGGAGACGGCGTGTTCTGATGATAA
LOC_Os07g16130
Os.52325.1.S1_at--759--5891Chr07:9395602..9395626 (25 bp)
GAGCTGCCTATCCATGAACATCATT
LOC_Os07g16130
Os.52325.1.S1_at--289--6511Chr07:9395639..9395663 (25 bp)
GATATGTTTCTTTGCTTTAGCCATG
LOC_Os07g16130
Os.52325.1.S1_at--140--10471Chr07:9395655..9395679 (25 bp)
TTAGCCATGCATCGATCCCTGTAAA
LOC_Os07g16130
Os.52325.1.S1_at--263--6911Chr07:9395716..9395740 (25 bp)
GTATGCTTGTTTCTTTGTGGTAATT
LOC_Os07g16130
Os.52325.1.S1_at--627--3191Chr07:9395797..9395821 (25 bp)
CAATGACGATCTTTTTGCCAGTGTC
LOC_Os07g16130
Target Sequence 
CCAGATATCTGAGGCGCCATTCGAGAAAATTGTTGGTGTGGTGGACTGCACAGTTCAGAATGAAGCTGACATACTTAAGA
ACCTCCAAGGCGTCGACGAGTACCTCTATGTGTCAGGAATTGCGGTGTTGCCATCCTTCAGGAGGAGGAAGGTAGGGACT
GCGCTGCTGAAAGCCTGCGAGGCGCTGGCGCTCCAGTGGAGGCACAGATTCATGGCGCTGAGGGCTTACAAGGACGACGA
TGGAGCTCGAGGCCTTTACTCCAAGGCGGGGTACAGGGTGGTGGCAAAGGATCCTGGATGGGTCACCTGGGTGGGAAGGA
GACGGCGTGTTCTGATGATAAAGGAGCTGCCTATCCATGAACATCATTTAGAACAGCAATGATATGTTTCTTTGCTTTAG
CCATGCATCGATCCCTGTAAATGTATCACTTTTGCTGTGAGTATCACTAGTGCATATGTATGCTTGTTTCTTTGTGGTAA
TTTGATTCAAGTTTGGTGTAGCATAAATCAATAGTATAGGTGAATGAATGGCTATTAGCAATGACGATCTTTTTGCCAGT
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis