Browse Element(s) Details


OsAffx.5345.1.S1_at

Description tigr:9635.m01603
TID=OsAffx.5345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1607011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16030Os.53334.3.S1_at11/117+9343565..9345601hypothetical protein
LOC_Os07g16030Os.53334.1.S1_x_at6/117+9343565..9345601hypothetical protein
LOC_Os07g16040Os.26453.1.S1_s_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.2.S1_x_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.1.S1_at9/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16054NANA7+9357880..9360614hypothetical protein
LOC_Os07g16070OsAffx.5345.1.S1_at11/117+9367436..9370474hypothetical protein
LOC_Os07g16070OsAffx.31070.1.S1_x_at1/117+9367436..9370474hypothetical protein
LOC_Os07g16080NANA7+9371282..9371701retrotransposon protein, putative, unclassified
LOC_Os07g16090Os.40855.5.S1_x_at11/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_at9/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_x_at8/117+9375387..9378722hypothetical protein
LOC_Os07g16090OsAffx.15821.2.S1_at4/117+9375387..9378722hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_x_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16110OsAffx.17914.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.2606.1.S1_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16110OsAffx.1436.1.S1_x_at1/117+9382966..9383869hypothetical protein
LOC_Os07g16120OsAffx.20387.1.S1_x_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.4941.1.S1_at3/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16120OsAffx.29419.3.S1_at1/117+9385613..9391312retrotransposon protein, putative, unclassified
LOC_Os07g16130Os.52325.1.S1_at11/117+9393670..9395830acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5345.1.S1_at--502--491Chr07:9369479..9369503 (25 bp)
ATCTGGACCTGAAGAGGGCTCGAGA
LOC_Os07g16070
OsAffx.5345.1.S1_at--879--8531Chr07:9369482..9369506 (25 bp)
TGGACCTGAAGAGGGCTCGAGATCA
LOC_Os07g16070
OsAffx.5345.1.S1_at--1051--9491Chr07:9369961..9369985 (25 bp)
TCTCGAGGACGCGTTGGCTGACCGA
LOC_Os07g16070
OsAffx.5345.1.S1_at--827--6131Chr07:9370057..9370081 (25 bp)
GAGGGACCAGGCTGTGAAGACTCTC
LOC_Os07g16070
OsAffx.5345.1.S1_at--1130--4311Chr07:9370063..9370087 (25 bp)
CCAGGCTGTGAAGACTCTCCGAGGT
LOC_Os07g16070
OsAffx.5345.1.S1_at--388--3851Chr07:9370123..9370147 (25 bp)
CTGCACAGCGATGACGGGAGTCTGC
LOC_Os07g16070
OsAffx.5345.1.S1_at--867--8351Chr07:9370189..9370213 (25 bp)
GGCGGCTACATCTCGTCGTAATGAG
LOC_Os07g16070
OsAffx.5345.1.S1_at--944--9871Chr07:9370195..9370219 (25 bp)
TACATCTCGTCGTAATGAGGCTTGT
LOC_Os07g16070
OsAffx.5345.1.S1_at--562--7911Chr07:9370233..9370257 (25 bp)
GGATTGGCAAATGTATCGATGAGGC
LOC_Os07g16070
OsAffx.5345.1.S1_at--395--3951Chr07:9370376..9370400 (25 bp)
CGGAGGACTCCTGCAGAAATCGACG
LOC_Os07g16070
OsAffx.5345.1.S1_at--1161--9231Chr07:9370384..9370408 (25 bp)
TCCTGCAGAAATCGACGGTCTTGCG
LOC_Os07g16070
Target Sequence 
ATCTGGACCTGAAGAGGGCTCGAGATCAAGGGGCCGCCGATGACGCGCGCAAGGATCTCGAGGACGCGTTGGCTGACCGA
GATCGTCGAATCCAATATTGGAAGACGAAGCTCGAGGTCGCCGAGCTCGAGAGGGACATGGTGAAGGTGAAGAGGGACCA
GGCTGTGAAGACTCTCCGAGGTCGCGAGGTGTGGTTCAACTCGTACCTCAAGAGCTGCTGCACAGCGATGACGGGAGTCT
GCAGGGAGCTCCGAGTTCATCGCGGAGATCCCGAGGAGTCGGCGGCGGCTACATCTCGTCGTAATGAGGCTTGTGCACAG
CTCGAAGGGATTGGCAAATGTATCGATGAGGCCCTGAAGCAGGAGTGTCGTCGATCGAGCCGGTACGCCGAAGGGCATGT
GCTGGCCTGCATCCGAGATCACCGCCCTCAGCTGCACCTCGAGTTCCTCCACGAAGGGTTCTCGCGTTCTCGGAGGACTC
CTGCAGAAATCGACGGTCTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis