Browse Element(s) Details


Os.53334.1.S1_x_at

Description gb:AK111419.1
DB_XREF= gi:32996628
TID=Os.53334.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G07, full insert sequence.
FL= gb:AK072054.1 gb:AK111419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g160306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15990NANA7+9318274..9318828transposon protein, putative, unclassified
LOC_Os07g16000OsAffx.22385.1.S1_x_at8/117+9319459..9325306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16000OsAffx.20329.1.S1_at1/117+9319459..9325306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16010OsAffx.22385.1.S1_x_at11/117+9329217..9329843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16019NANA7+9333143..9333606NA
LOC_Os07g16030Os.53334.3.S1_at11/117+9343565..9345601hypothetical protein
LOC_Os07g16030Os.53334.1.S1_x_at6/117+9343565..9345601hypothetical protein
LOC_Os07g16040Os.26453.1.S1_s_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.2.S1_x_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.1.S1_at9/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16054NANA7+9357880..9360614hypothetical protein
LOC_Os07g16070OsAffx.5345.1.S1_at11/117+9367436..9370474hypothetical protein
LOC_Os07g16070OsAffx.31070.1.S1_x_at1/117+9367436..9370474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53334.1.S1_x_at--980--351Chr07:9345254..9345278 (25 bp)
ATAATGCTACCGCTCGCTAATTGTT
LOC_Os07g16030
Os.53334.1.S1_x_at--21--8791Chr07:9345275..9345299 (25 bp)
TGTTCCCATTTAGCAACAACCCTGT
LOC_Os07g16030
Os.53334.1.S1_x_at--661--6731Chr07:9345409..9345433 (25 bp)
GTTCATTCTCTTTTCAATTAGCCCT
LOC_Os07g16030
Os.53334.1.S1_x_at--75--3131Chr07:9345424..9345448 (25 bp)
AATTAGCCCTATTTCTTCAAGTATA
LOC_Os07g16030
Os.53334.1.S1_x_at--371--10851Chr07:9345489..9345513 (25 bp)
TTGGTGCATGAACTGGCCTTAAATT
LOC_Os07g16030
Os.53334.1.S1_x_at--685--7091Chr07:9345517..9345541 (25 bp)
GTCAAACTCCATTAGCGAGCGGATT
LOC_Os07g16030
Os.53334.1.S1_x_at--1060--6231Chr07:9345628..9345652 (25 bp)
GATGGATCAATGTCGCCCAACGAAG
NONE
Os.53334.1.S1_x_at--626--5311Chr07:9345649..9345673 (25 bp)
GAAGGTAACCGGCTGACACAAAATT
NONE
Os.53334.1.S1_x_at--375--8772Chr07:9345737..9345761 (25 bp)
TGTATCGGCAGCAAACTATCTTTTT
NONE
Os.53334.1.S1_x_at--220--7271Chr07:9345762..9345786 (25 bp)
GTCCATTAATTGTCTTGTTGTCTTG
NONE
Os.53334.1.S1_x_at--374--6171Chr07:9345789..9345813 (25 bp)
GAGGATCTTGGCTGCAACTACTGAT
NONE
Target Sequence 
ATAATGCTACCGCTCGCTAATTGTTCCCATTTAGCAACAACCCTGTTATCTAGATTTACTACTTATATATTGCGTAAATA
GATACCTGAATAGGGAGATGAATATGTTTGTGCTGAACTTCAAACATAAAAAGCTTAATTCGAACCGATTCTNTTGTTCA
TTCTCTTTTCAATTAGCCCTATTTCTTCAAGTATATGAATGGTGGATGGATGTAATTCATGCATGGAATGCTTTATTGGT
GCATGAACTGGCCTTAAATTGCAGTCAAACTCCATTAGCGAGCGGATTTGGAGAGCCAGATATTTTTCTGAATACTTTTG
TGTGCAGATTTGGAGAGCCACTGAATAATTGATTAATGTATTTTTGCTTTTTGTGATGGATCAATGTCGCCCAACGAAGG
TAACCGGCTGACACAAAATTATTTTGTAGTAAATACAAAGTTATCCCACACAATCATATGTCTTTTTTTAAGCAAATATT
CTATGTATCGGCAGCAAACTATCTTTTTGTCCATTAATTGTCTTGTTGTCTTGTTGAGGATCTTGGCTGCAACTACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53334.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis