Browse Element(s) Details


Os.57316.1.S1_at

Description gb:AK111286.1
DB_XREF= gi:32996495
TID=Os.57316.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H09, full insert sequence.
FL= gb:AK111286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g389403/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38880Os.51299.1.S1_at11/115+22724181..22724752expressed protein
LOC_Os05g38890OsAffx.18122.1.S1_x_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38890OsAffx.3966.1.S1_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38900Os.10827.1.S1_x_at6/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38900Os.46055.2.S1_x_at4/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38910NANA5+22735567..22736094hypothetical protein
LOC_Os05g38920OsAffx.25936.7.S1_s_at5/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.1.S1_s_at4/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.5.S1_x_at2/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.2.S1_x_at2/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.1.S1_at1/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38930OsAffx.27233.1.S1_at11/115+22743030..22743383hypothetical protein
LOC_Os05g38940Os.57316.1.S1_at3/115+22745254..22745496expressed protein
LOC_Os05g38950Os.35780.1.S1_at11/115+22751806..22758825RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57316.1.S1_at--681--5071Chr05:22745300..22745324 (25 bp)
GCAGCGGCAGTTTCATCAGTGGCAA
LOC_Os05g38940
Os.57316.1.S1_at--979--3431Chr05:22745365..22745389 (25 bp)
CAGATTGTGAGGACGCTCAGCAACC
LOC_Os05g38940
Os.57316.1.S1_at--739--2931Chr05:22745449..22745473 (25 bp)
AAGGCAGCGGATCGCAGCAGCTTCA
LOC_Os05g38940
Os.57316.1.S1_at--90--1571Chr05:22745485..22745509 (25 bp)
AGCTACAACTGAATCGATCCAATCG
NONE
Os.57316.1.S1_at--1082--4031Chr05:22745499..22745523 (25 bp)
CGATCCAATCGAACAGCAACATCAT
NONE
Os.57316.1.S1_at--376--3611Chr05:22745571..22745595 (25 bp)
CTTGTGTACGTGTGCTGTGCAGTAG
NONE
Os.57316.1.S1_at--747--8691Chr05:22745581..22745605 (25 bp)
TGTGCTGTGCAGTAGGAGTATTCCG
NONE
Os.57316.1.S1_at--318--8011Chr05:22745595..22745619 (25 bp)
GGAGTATTCCGTACGTAGATGTGTA
NONE
Os.57316.1.S1_at--391--2331Chr05:22745650..22745674 (25 bp)
AAAGTTGCTGCTGCTAGATTGTAGA
NONE
Os.57316.1.S1_at--236--10051Chr05:22745664..22745688 (25 bp)
TAGATTGTAGATGCCCTTTTGTTCA
NONE
Os.57316.1.S1_at--547--10391Chr05:22745703..22745727 (25 bp)
TTGTTCGGACCTTTCGGAGTATTAG
NONE
Target Sequence 
GCAGCGGCAGTTTCATCAGTGGCAAGGAGAAGAGGCCGCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATTGTGAGGACG
CTCAGCAACCTCATGGCGCCGGCGACGAGGAGCAGCGGCGACGCTGNNGCTGCTGCAGACTCCAAGAAGAAGGCAGCGGA
TCGCAGCAGCTTCAGGAGAGAAGCCAGCTACAACTGAATCGATCCAATCGAACAGCAACATCATCATCATCTGATACTCA
GATTGATATGCATATTACTTGTAGTATATTGCTTGTGTACGTGTGCTGTGCAGTAGGAGTATTCCGTACGTAGATGTGTA
TGGATCGATGTAGTTGACATGGTGACAGGAAAAGTTGCTGCTGCTAGATTGTAGATGCCCTTTTGTTCATCTTTCCCTCA
ATTTTGTTCGGACCTTTCGGAGTATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis