Browse Element(s) Details


Os.57319.1.S1_at

Description gb:AK111293.1
DB_XREF= gi:32996502
TID=Os.57319.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A07, full insert sequence.
FL= gb:AK111293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2408411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24070OsAffx.7683.1.S1_at11/1112+13675640..13676298hypothetical protein
LOC_Os12g24080Os.7856.1.S1_at11/1112+13694409..13699916E3 ubiquitin protein ligase UPL1, putative, expressed
LOC_Os12g24084Os.57319.1.S1_at11/1112+13700648..13701177expressed protein
LOC_Os12g24090OsAffx.31859.1.S1_at11/1112+13702410..13703495hypothetical protein
LOC_Os12g24100NANA12+13704466..13708312retrotransposon protein, putative, unclassified
LOC_Os12g24110NANA12+13710442..13717175retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g24120NANA12+13720729..13723763retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57319.1.S1_at--644--4571Chr12:13700704..13700728 (25 bp)
GCGCTACTGCGCCACTACAGGTGAG
LOC_Os12g24084
Os.57319.1.S1_at--229--571Chr12:13700761..13700785 (25 bp)
ATCCTCATCCTTCCTTTACTTGTGG
LOC_Os12g24084
Os.57319.1.S1_at--834--4151Chr12:13700913..13700937 (25 bp)
CGCCGCCACATTCAGTAATTAAGAT
LOC_Os12g24084
Os.57319.1.S1_at--416--6451Chr12:13700935..13700959 (25 bp)
GATCAAATCCGTTAGCCTTAAGGCG
LOC_Os12g24084
Os.57319.1.S1_at--833--4431Chr12:13700949..13700973 (25 bp)
GCCTTAAGGCGTTGGATGTGGTATA
LOC_Os12g24084
Os.57319.1.S1_at--362--10451Chr12:13701004..13701028 (25 bp)
TTAGCTACTACTGGCGAAACTGGTT
LOC_Os12g24084
Os.57319.1.S1_at--898--2371Chr12:13701020..13701044 (25 bp)
AAACTGGTTATCTAGTCATGCGTAC
LOC_Os12g24084
Os.57319.1.S1_at--903--2391Chr12:13701057..13701081 (25 bp)
AAACTATCTATTAGTCTCTGCCTAA
LOC_Os12g24084
Os.57319.1.S1_at--1137--7151Chr12:13701070..13701094 (25 bp)
GTCTCTGCCTAATGCGACGTGTATA
LOC_Os12g24084
Os.57319.1.S1_at--548--792Chr12:13701122..13701146 (25 bp)
ATGTGTACTAGTTTGGCACCATGAT
LOC_Os12g24084
Os.57319.1.S1_at--758--831Chr12:13701145..13701169 (25 bp)
ATGGATGTGGTATTTCTAGCTTACA
LOC_Os12g24084
Target Sequence 
GCGCTACTGCGCCACTACAGGTGAGGGCCGTCCGTCGGAGCCGCCGCCGGTGCTCCCATCCTCATCCTTCCTTTACTTGT
GGGGACGGCGGTGGCGGGGAGAGGACGAATGCGGTGCCTGTCGGAGCCGTCGCCGGTACTCCCTACCTCCTCCTCCTACT
TGGGCCGGCGGAGGCAGTGGTGGCGAGGGGAGGGCGGGTGTGCCGCCGCCGCCGCCACATTCAGTAATTAAGATCAAATC
CGTTAGCCTTAAGGCGTTGGATGTGGTATATCTAGCATACAGATGTACGAAGTAGGTAGATTAGCTACTACTGGCGAAAC
TGGTTATCTAGTCATGCGTACTAGTACATCTCTAAACTATCTATTAGTCTCTGCCTAATGCGACGTGTATATATATATAT
ATTCGAGAGACAACCATTATGTGTACTAGTTTGGCACCATGATGGATGTGGTATTTCTAGCTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis