Browse Element(s) Details


Os.57362.1.S1_at

Description gb:AK111372.1
DB_XREF= gi:32996581
TID=Os.57362.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A07, full insert sequence.
FL= gb:AK111372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1015010/11expressed protein
LOC_Os10g050692/11glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os01g374802/11expressed protein
LOC_Os02g187701/11hypothetical protein
LOC_Os01g258801/11dephospho-CoA kinase family protein, expressed
LOC_Os09g311601/11Glutamate receptor 3.3 precursor, putative
LOC_Os09g113201/11hypothetical protein
LOC_Os11g328701/11hypothetical protein
LOC_Os01g688501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10110NANA4+5440620..5441805retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_at4/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_x_at3/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120Os.51491.1.S1_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.8201.1.S1_x_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10130OsAffx.3761.1.S1_x_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10130OsAffx.3761.1.S1_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein
LOC_Os04g10180OsAffx.25950.1.S1_at11/114+5485954..5487442hypothetical protein
LOC_Os04g10190NANA4+5488983..5491937retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0006883biological_processsodium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0015937biological_processcoenzyme A biosynthesis
GO:0030007biological_processpotassium ion homeostasis
GO:0004140molecular_functiondephospho-CoA kinase activity
GO:0004559molecular_functionalpha-mannosidase activity
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57362.1.S1_at--750--5991Chr04:5464001..5464025 (25 bp)
GAGACGTCTCCGCATGAGCTGCAGC
LOC_Os04g10150
Os.57362.1.S1_at--750--7511NONE
GTGGATGGCGTTACCGCTGTCAAGC
NONE
Os.57362.1.S1_at--222--6931Chr04:5463867..5463891 (25 bp)
GTAGGATCTCTTGGCGGACCTGCTA
LOC_Os04g10150
Os.57362.1.S1_at--520--7615Chr12:19472675..19472699 (25 bp)
GGGCAATCTCGTCATTTGGAAAAAA
NONE
Os.57362.1.S1_at--633--10573Chr08:25991323..25991345 (22 bp)
TTCTCACCTCTTTTGAACCGAAAAT
NONE
Os.57362.1.S1_at--1054--58138Chr12:12757031..12757051 (21 bp)
GACCGGTGTCCTATAGCCAATTACA
NONE
Os.57362.1.S1_at--891--1721Chr10:11895112..11895136 (25 bp)
ATTTTTGTAGTGTCCATCAGCCGTG
NONE
Os.57362.1.S1_at--914--1676Chr06:20348756..20348779 (24 bp)
AGCCGTGTCACGTTTTTGCGATGTT
NONE
Os.57362.1.S1_at--1135--10691Chr04:5463574..5463598 (25 bp)
TTGCGATGTTTCATAGCCAATTACA
LOC_Os04g10150
Os.57362.1.S1_at--42--21121Chr11:26783359..26783553 (25 bp)
ACATGTTTTTTGAGTGTCCTGTAGC
NONE
Os.57362.1.S1_at--282--7411Chr04:5463501..5463525 (25 bp)
GTGATAACCTGAATTACCGTAACTA
LOC_Os04g10150
Target Sequence 
GAGACGTCTCCGCATGAGCTGCAGCTGCTGTGTCCTCGCTCGACGCGTGGATGGCGTTACCGCTGTCAAGCTCTGCCGCC
GGCACCGACGAGGAGGAGGAGGATGGCGGCAGCGCAACAGCCATCGCCGCCGTGGTAGGATCTCTTGGCGGACCTGCTAG
GGCTCGTGCTCCTCCAGCTCCCGTCCCTTCCAACCACGTCCGCCTCCGCGCCGTCTGCTGCTCCTGGCGCGCGGTCACCA
CCGCCAGCTACCTCGCCGGCAGCTACAAAAAATTTGTGATTTCGGGTGAAGGAAGATGGCACAGGGGCAATCTCGTCATT
TGGAAAAAATTCTCACCTCTTTTGAACCGAAAATAATAAAATAATGCGACCGGTGTCCTATAGCCAATTACACAATTTTT
GTAGTGTCCATCAGCCGTGTCACGTTTTTGCGATGTTTCATAGCCAATTACATGTTTTTTGAGTGTCCTGTAGCAAATTT
TGCCCAATCTAAAATATGTAGTGATAACCTGAATTACCGTAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis