Browse Element(s) Details


Os.57368.1.S1_at

Description gb:AK111390.1
DB_XREF= gi:32996599
TID=Os.57368.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C04, full insert sequence.
FL= gb:AK111390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g199104/11hypothetical protein
LOC_Os06g349503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19910OsAffx.27945.1.S1_at11/1110+9643094..9644723hypothetical protein
LOC_Os10g19910OsAffx.27945.1.S1_s_at11/1110+9643094..9644723hypothetical protein
LOC_Os10g19910Os.57368.1.S1_at4/1110+9643094..9644723hypothetical protein
LOC_Os10g19930Os.46012.1.S1_at6/1110+9663266..9663691retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57368.1.S1_at--1046--71NONE
ATTGCCGTGATGGACATCGATCTAA
NONE
Os.57368.1.S1_at--169--512Chr10:9642928..9643383 (25 bp)
ATCGATCTAAGAACCAGGCCCGTCG
NONE
Os.57368.1.S1_at--884--1571Chr10:9643392..9643581 (25 bp)
AGCTCCACTCCCATGAAAAGATTTG
LOC_Os10g19910
Os.57368.1.S1_at--868--2812Chr10:9643575..9643598 (24 bp)
AAGATTTGCAGGTTTCCCGATCAGA
LOC_Os10g19910
Os.57368.1.S1_at--526--6092Chr10:9643630..9643654 (25 bp)
GAGTCAGATCCAACATCAACCTTCT
LOC_Os10g19910
Os.57368.1.S1_at--437--8152Chr10:9643717..9643741 (25 bp)
GGAAAGCCAGCGCTCAGCTCCTTTC
LOC_Os10g19910
Os.57368.1.S1_at--519--9251NONE
TCCTTTCTCAGAACCAGTGCTGGGA
NONE
Os.57368.1.S1_at--1087--1512Chr10:9644709..9644733 (25 bp)
AGCAGCAACATCTAGTTTTTTCATT
NONE
Os.57368.1.S1_at--110--4211Chr10:9644758..9644782 (25 bp)
CCCCGAGTCTTTGTAAACATGAAAT
NONE
Os.57368.1.S1_at--702--731Chr10:9644814..9644838 (25 bp)
ATGTTACTGTAGTAGCCAGGGAGTA
NONE
Os.57368.1.S1_at--851--5872Chr10:9644880..9644904 (25 bp)
GAGCGATGTGTTAGTACGTTTTTAT
NONE
Target Sequence 
ATTGCCGTGATGGACATCGATCTAAGAACCAGGCCCGTCGCTGACCCAAGCTCCACTCCCATGAAAAGATTTGCAGGTTT
CCCGATCAGAGCACACACGTTTCCCAAGTTCTCACTGAGGTGAGTCAGATCCAACATCAACCTTCTCCACGGAGCCGTGT
GGACTGTGGAGGACGAGGCAGTGCTGCCTGGCAGATGGAGTGGAGGGAGGAAAGCCAGCGCTCAGCTCCTTTCTCAGAAC
CAGTGCTGGGACAAGGCCTCCAAACAAAATGTTTGATTGCAGGCTGGGACAAGGCCTCCAAACAAAACTTCTACGGTTGT
TGGCACATGCGCCATCGTCGGCTACGATTTGTCCTCCGCCGATCCAATTGGAGCAGCAACATCTAGTTTTTTCATTTGTA
CAATCAATATGTATGTGTACCCCCGAGTCTTTGTAAACATGAAATGTAGCTGTAATTTATTTTTGGCTTGGTAAATATGT
TACTGTAGTAGCCAGGGAGTAATTTATTTTTATGAGAGAAGATTGAAGTAAATTTGTTGTTAGAGCGATGTGTTAGTACG
TTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis