Browse Element(s) Details


OsAffx.27945.1.S1_s_at

Description tigr:9638.m01634
TID=OsAffx.27945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1991011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19910OsAffx.27945.1.S1_at11/1110+9643094..9644723hypothetical protein
LOC_Os10g19910OsAffx.27945.1.S1_s_at11/1110+9643094..9644723hypothetical protein
LOC_Os10g19910Os.57368.1.S1_at4/1110+9643094..9644723hypothetical protein
LOC_Os10g19930Os.46012.1.S1_at6/1110+9663266..9663691retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27945.1.S1_s_at--586--871Chr10:9644591..9644615 (25 bp)
AGGCCTCCAAACAAAATGTTTGATT
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--85--2452Chr10:9644603..9644627 (25 bp)
AAAATGTTTGATTGCAGGCTGGGAC
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--960--13Chr10:9644575..9644599 (25 bp)
ATTGCAGGCTGGGACAAGGCCTCCA
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--9--9032Chr10:9644577..9644601 (25 bp)
TGCAGGCTGGGACAAGGCCTCCAAA
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--1054--2412Chr10:9644641..9644665 (25 bp)
AAAACTTCTACGGTTGTTGGCACAT
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--364--2052Chr10:9644644..9644668 (25 bp)
ACTTCTACGGTTGTTGGCACATGCG
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--974--10572Chr10:9644646..9644670 (25 bp)
TTCTACGGTTGTTGGCACATGCGCC
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--710--9932Chr10:9644649..9644673 (25 bp)
TACGGTTGTTGGCACATGCGCCATC
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--586--7912Chr10:9644652..9644676 (25 bp)
GGTTGTTGGCACATGCGCCATCGTC
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--248--10792Chr10:9644654..9644678 (25 bp)
TTGTTGGCACATGCGCCATCGTCGG
LOC_Os10g19910
OsAffx.27945.1.S1_s_at--365--5111Chr10:9644660..9644684 (25 bp)
GCACATGCGCCATCGTCGGCTACGA
LOC_Os10g19910
Target Sequence
AGGCCTCCAAACAAAATGTTTGATTGCAGGCTGGGACAAGGCCTCCAAACAAAACTTCTACGGTTGTTGGCACATGCGCC
ATCGTCGGCTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27945.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis