Browse Element(s) Details


Os.57429.1.S1_x_at

Description gb:AY224486.1
DB_XREF= gi:29367498
TID=Os.57429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29983 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) isolate 29983 unknown mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3045011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein
LOC_Os10g30450OsAffx.6821.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_s_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30460Os.29992.2.S1_x_at3/1110+15501344..15502451hypothetical protein
LOC_Os10g30460OsAffx.7866.1.S1_x_at1/1110+15501344..15502451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57429.1.S1_x_at--147--8411Chr10:15498156..15498180 (25 bp)
GGCCCGCCGCCCAAGAAGGATAAGG
LOC_Os10g30450
Os.57429.1.S1_x_at--789--4511Chr10:15498157..15498181 (25 bp)
GCCCGCCGCCCAAGAAGGATAAGGA
LOC_Os10g30450
Os.57429.1.S1_x_at--216--8071Chr10:15498305..15498329 (25 bp)
GGAGAAGAAAGCCAAGGAGCCCAAA
LOC_Os10g30450
Os.57429.1.S1_x_at--762--5551Chr10:15498311..15498333 (23 bp)
GAAAGCCAAGGAGCCCAAAGAGGAG
LOC_Os10g30450
Os.57429.1.S1_x_at--832--4531Chr10:15498323..15498465 (25 bp)
GCCCAAAGAGGAGACGGTGACGCTC
LOC_Os10g30450
Os.57429.1.S1_x_at--863--6171Chr10:15498449..15498472 (24 bp)
GAGGAGACGGTGACGCTCAAGATCC
LOC_Os10g30450
Os.57429.1.S1_x_at--327--1391Chr10:15498452..15498476 (25 bp)
AGACGGTGACGCTCAAGATCCGCCT
LOC_Os10g30450
Os.57429.1.S1_x_at--1138--2791Chr10:15498466..15498490 (25 bp)
AAGATCCGCCTCCACTGCGAGGGAT
LOC_Os10g30450
Os.57429.1.S1_x_at--422--4471Chr10:15498473..15498497 (25 bp)
GCCTCCACTGCGAGGGATGCATCGA
LOC_Os10g30450
Os.57429.1.S1_x_at--689--1971Chr10:15498479..15498503 (25 bp)
ACTGCGAGGGATGCATCGACCGCAT
LOC_Os10g30450
Os.57429.1.S1_x_at--383--9151Chr10:15498481..15498505 (25 bp)
TGCGAGGGATGCATCGACCGCATCA
LOC_Os10g30450
Target Sequence 
GGCCCGCCGCCCAAGAAGGATAAGGAGGAGAAGAAGGACAAGGACAAGAAGGGCGGCGGCGACGACAAGAAGGCCGAGAA
GGAGAAGGGCGGCGGCGGCGGCGATAAGAAGGCGGAGAAGGAGAAGGGCGGCGGCGACAAGCCCAAGGAGGAGAAGAAAG
CCAAGGAGCCCAAAGAGGAGACGGTGACGCTCAAGATCCGCCTCCACTGCGAGGGATGCATCGACCGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57429.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis