Browse Element(s) Details


Os.5747.1.S1_at

Description gb:AK059220.1
DB_XREF= gi:32969238
TID=Os.5747.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D01, full insert sequence.
FL= gb:AK059220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g452809/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45230OsAffx.27315.1.S1_at11/115+26173688..26174546hypothetical protein
LOC_Os05g45240NANA5+26178012..26180497flavin monoxygenase-like protein floozy, putative
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed
LOC_Os05g45290OsAffx.15112.1.S1_at11/115+26201544..26202035hypothetical protein
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein

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Gene Ontology Classification
GO idTypeName
GO:0010222biological_processstem vascular tissue pattern formation
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5747.1.S1_at--375--10331Chr05:26197074..26197098 (25 bp)
TTTCATTACATCATCAGTCTCTCTC
LOC_Os05g45280
Os.5747.1.S1_at--188--5471Chr05:26196859..26196883 (25 bp)
GAACTGTACTGCGTGTATGTCCCAA
LOC_Os05g45280
Os.5747.1.S1_at--999--8691Chr05:26196842..26196866 (25 bp)
TGTCCCAACCAACCATCTTTATATT
LOC_Os05g45280
Os.5747.1.S1_at--736--2951Chr05:26196782..26196806 (25 bp)
AAGGCCAAATCTTTCTGTCCGTGAA
LOC_Os05g45280
Os.5747.1.S1_at--731--6351Chr05:26196613..26196637 (25 bp)
GATGCCCCAAATTCTATCAACTCTG
LOC_Os05g45280
Os.5747.1.S1_at--525--1451Chr05:26196549..26196573 (25 bp)
AGAAGCTGAGATCTCTCCTTGGTTG
LOC_Os05g45280
Os.5747.1.S1_at--400--7811Chr05:26196459..26196483 (25 bp)
GGTCTGTCGAGCTCTAGGATCACAA
LOC_Os05g45280
Os.5747.1.S1_at--593--9791Chr05:26196320..26196344 (25 bp)
TAACGCCTTCTTTACTTCTTACTGT
LOC_Os05g45280
Os.5747.1.S1_at--1041--10371NONE
TTTTGAGCGGTTGACAGCACTTGCC
NONE
Os.5747.1.S1_at--674--1491Chr05:26196282..26196306 (25 bp)
AGCACTTGCCTTTAACCATGTTGAA
LOC_Os05g45280
Os.5747.1.S1_at--752--7811Chr05:26196257..26196281 (25 bp)
GGTCATCCTGGTGAACTCTTGAAAT
NONE
Target Sequence 
TTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATC
TTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATT
GTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCNCAGACAATTCTTGGAGNCAGAACAGGAGC
AAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAA
CNCGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCT
TGTTCATCCGNTTGGCAGTTTGTACCATGGTTTGCACTTTNTACCACGNTTNTATACAANAATGCTTCGTAGTTGTAACG
CCTTCTTTACTTCTTACTGTTTTGAGCGGTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTG
AAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis