Browse Element(s) Details


Os.57548.1.S1_at

Description gb:AF159883.1
DB_XREF= gi:5360179
GEN=Fdr1
TID=Os.57548.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57548 (NCBI UniGene Cluster)
DEF=Oryza sativa Cen-like protein FDR1 (Fdr1) mRNA, complete cds.
PROD=Cen-like protein FDR1
FL= gb:AF159883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0559011/11CENTRORADIALIS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57548.1.S1_at--764--3951Chr12:2564701..2564813 (25 bp)
CGGATGCCTCTTTTGGACGGGAAAT
LOC_Os12g05590
Os.57548.1.S1_at--1116--2351Chr12:2564658..2564682 (25 bp)
AAAGCCCAGCATTGGTATCCACAGG
LOC_Os12g05590
Os.57548.1.S1_at--231--7671Chr12:2564575..2564599 (25 bp)
GGGATCATTTCAATACACGCCAGTT
LOC_Os12g05590
Os.57548.1.S1_at--558--8051Chr12:2564544..2564568 (25 bp)
GGAGAACGAACTTGGCCTTCCTGTC
LOC_Os12g05590
Os.57548.1.S1_at--531--8711Chr12:2564523..2564547 (25 bp)
TGTCGCTGCTGTCTACTTCAATGCT
LOC_Os12g05590
Os.57548.1.S1_at--144--5731Chr12:2564490..2564514 (25 bp)
GACTGCTGCCAGGAGACGCTAAAAA
LOC_Os12g05590
Os.57548.1.S1_at--976--2391Chr12:2564469..2564493 (25 bp)
AAAAATTCCAGCTGTCATTATCCCC
LOC_Os12g05590
Os.57548.1.S1_at--367--2371Chr12:2564430..2564454 (25 bp)
AAACCATCCAATAGTTTCTCCTGTC
LOC_Os12g05590
Os.57548.1.S1_at--393--7211Chr12:2564408..2564432 (25 bp)
GTCGTCTACATTATCTGCCACATCA
LOC_Os12g05590
Os.57548.1.S1_at--563--371Chr12:2564372..2564396 (25 bp)
ATCAAGGCTTCATCATTACGTCATT
LOC_Os12g05590
Os.57548.1.S1_at--37--1111Chr12:2564298..2564322 (25 bp)
AGTGTCAGATTGTTTCCCGTATCAA
LOC_Os12g05590
Target Sequence 
CGGATGCCTCTTTTGGACGGGAAATCATAAGCTATGAGAGCCCAAAGCCCAGCATTGGTATCCACAGGTTCGTTTTTGTG
CTCTTCAAGCAGAAGCGTAGGCAGGCTGTAGTTGTGCCATCCTCTAGGGATCATTTCAATACACGCCAGTTTGCTGAGGA
GAACGAACTTGGCCTTCCTGTCGCTGCTGTCTACTTCAATGCTCAGAGAGAGACTGCTGCCAGGAGACGCTAAAAAATTC
CAGCTGTCATTATCCCCGCTGTGATAAATAAAAACCATCCAATAGTTTCTCCTGTCGTCTACATTATCTGCCACATCACT
AGATTGTGGATCAAGGCTTCATCATTACGTCATTTGCCTCAAGAAAATCTACAATAAACCAAATGCATTTGACAGATTGT
ATCAGTGTCAGATTGTTTCCCGTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis