Browse Element(s) Details


OsAffx.7491.1.S1_x_at

Description tigr:9640.m00474
TID=OsAffx.7491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0556011/11hypothetical protein
LOC_Os09g033502/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05520NANA12+2526840..2530920retrotransposon protein, putative, unclassified
LOC_Os12g05529NANA12+2531932..2532622hypothetical protein
LOC_Os12g05540Os.13516.1.S1_at11/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05540OsAffx.9512.1.S1_x_at1/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7491.1.S1_x_at--735--5451Chr12:2550227..2550251 (25 bp)
GAACGTGTACATAATGGAGGAGAAC
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--36--953Chr12:2550264..2550288 (25 bp)
AGGAAGGCGCAGGCACTCAACCAGG
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--348--8213Chr12:2550265..2550289 (25 bp)
GGAAGGCGCAGGCACTCAACCAGGA
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--596--5291Chr12:2550266..2550290 (25 bp)
GAAGGCGCAGGCACTCAACCAGGAG
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--304--2951Chr12:2550267..2550291 (25 bp)
AAGGCGCAGGCACTCAACCAGGAGA
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--622--891Chr12:2550268..2550292 (25 bp)
AGGCGCAGGCACTCAACCAGGAGAA
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--637--8391Chr12:2550269..2550293 (25 bp)
GGCGCAGGCACTCAACCAGGAGAAC
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--168--4591Chr12:2550270..2550294 (25 bp)
GCGCAGGCACTCAACCAGGAGAACA
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--385--4131Chr12:2550271..2550295 (25 bp)
CGCAGGCACTCAACCAGGAGAACAA
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--1146--4151Chr12:2550305..2550329 (25 bp)
CGCCAAGCTCAACACCAACCACGCC
LOC_Os12g05560
OsAffx.7491.1.S1_x_at--63--5791Chr12:2550347..2550371 (25 bp)
GACGACGACCCAGCACCGGCCACCC
LOC_Os12g05560
Target Sequence 
GAACGTGTACATAATGGAGGAGAACGAGCGGCTGCGGAGGAAGGCGCAGGCACTCAACCAGGAGAACAAGGCCCTCCTCG
CCAAGCTCAACACCAACCACGCCGCCGCCTCCTCGACGTCGACGACGACCCAGCACCGGCCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7491.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis