Browse Element(s) Details


Os.13516.1.S1_at

Description gb:AK107301.1
DB_XREF= gi:32992510
TID=Os.13516.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C09, full insert sequence.
FL= gb:AK107301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0554011/11Ser/Thr protein phosphatase family protein, expressed
LOC_Os11g054102/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05490NANA12+2508934..2514637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05500OsAffx.1647.1.S1_at1/1112+2515221..2518171retrotransposon protein, putative, unclassified
LOC_Os12g05510OsAffx.19506.1.S1_at11/1112+2520695..2522452expressed protein
LOC_Os12g05520NANA12+2526840..2530920retrotransposon protein, putative, unclassified
LOC_Os12g05529NANA12+2531932..2532622hypothetical protein
LOC_Os12g05540Os.13516.1.S1_at11/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05540OsAffx.9512.1.S1_x_at1/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13516.1.S1_at--655--1892Chr12:2537413..2537437 (25 bp)
ACGTCCACGCGTACGAGAGGTTCGC
LOC_Os12g05540
Os.13516.1.S1_at--802--9331Chr12:2537653..2537677 (25 bp)
TCGCCGACGAGGTGTGGATCACCAG
LOC_Os12g05540
Os.13516.1.S1_at--940--5771Chr12:2537658..2537682 (25 bp)
GACGAGGTGTGGATCACCAGCCTCG
LOC_Os12g05540
Os.13516.1.S1_at--198--572Chr12:2537684..2537708 (25 bp)
ATCCAACCCGGCTTGCAACAAGAAG
LOC_Os12g05540
Os.13516.1.S1_at--705--3391Chr12:2537717..2537741 (25 bp)
CAGCTTGTATTGATGTGTGAGAAAC
LOC_Os12g05540
Os.13516.1.S1_at--823--8671Chr12:2537730..2537754 (25 bp)
TGTGTGAGAAACTAGGATGACGATA
LOC_Os12g05540
Os.13516.1.S1_at--1023--8931Chr12:2537747..2537771 (25 bp)
TGACGATAGGTAGTGTGATTCTCTT
LOC_Os12g05540
Os.13516.1.S1_at--1021--7851Chr12:2537755..2537779 (25 bp)
GGTAGTGTGATTCTCTTGATGATTA
LOC_Os12g05540
Os.13516.1.S1_at--204--9531Chr12:2537766..2537790 (25 bp)
TCTCTTGATGATTATACTACTTGAT
LOC_Os12g05540
Os.13516.1.S1_at--1046--2011Chr12:2537781..2537805 (25 bp)
ACTACTTGATAAATCTCTCTCACAT
LOC_Os12g05540
Os.13516.1.S1_at--1102--3051Chr12:2537792..2537816 (25 bp)
AATCTCTCTCACATAAATTATATAG
LOC_Os12g05540
Target Sequence 
ACGTCCACGCGTACGAGAGGTTCGCGCGGGTGTACGGCGGCGGCGAGGACGCGTGCGGGCCGGTGCACGTGACCGTCGGC
GACGGCGGCAACCGGGAGGGNCTCGCCACGAGGTACGTCGACCCGCAGCCGGCGGCGTCGGCGTTCAGGGAGGCGAGCTT
CGGGCACGGCAGGCTGGAGGTGGTGAACGCCACGCACGCGCTGTGGACGTGGCGGCGGAACGACGACGACGAGGCGGTGG
TCGCCGACGAGGTGTGGATCACCAGCCTCGCATCCAACCCGGCTTGCAACAAGAAGNATTCCATCAGCTTGTATTGATGT
GTGAGAAACTAGGATGACGATAGGTAGTGTGATTCTCTTGATGATTATACTACTTGATAAATCTCTCTCACATAAATTAT
ATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis