Browse Element(s) Details


OsAffx.19506.1.S1_at

Description tigr:9640.m00469
TID=OsAffx.19506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0551011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05450Os.52238.1.S1_at7/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450Os.49936.2.A1_at3/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450Os.33601.3.S1_x_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450OsAffx.828.1.S1_x_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450OsAffx.15708.1.S1_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05460NANA12+2500495..2502244transposon protein, putative, Mutator sub-class
LOC_Os12g05470OsAffx.7490.1.S1_at11/1112+2505940..2506512Plastocyanin-like domain containing protein
LOC_Os12g05480Os.51923.1.S1_at3/1112+2507911..2508183hypothetical protein
LOC_Os12g05490NANA12+2508934..2514637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05500OsAffx.1647.1.S1_at1/1112+2515221..2518171retrotransposon protein, putative, unclassified
LOC_Os12g05510OsAffx.19506.1.S1_at11/1112+2520695..2522452expressed protein
LOC_Os12g05520NANA12+2526840..2530920retrotransposon protein, putative, unclassified
LOC_Os12g05529NANA12+2531932..2532622hypothetical protein
LOC_Os12g05540Os.13516.1.S1_at11/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05540OsAffx.9512.1.S1_x_at1/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19506.1.S1_at--843--7471Chr12:2521058..2521082 (25 bp)
GTGGGATTATGATCGATTACAAGAC
LOC_Os12g05510
OsAffx.19506.1.S1_at--990--6411Chr12:2521030..2521054 (25 bp)
GATCTACGACAACGAAGCCAACAGC
LOC_Os12g05510
OsAffx.19506.1.S1_at--603--2571Chr12:2521020..2521044 (25 bp)
AACGAAGCCAACAGCCAGGGCCCGA
LOC_Os12g05510
OsAffx.19506.1.S1_at--602--5151Chr12:2520971..2520995 (25 bp)
GCAACGTGGACGGACATTCTGACAA
LOC_Os12g05510
OsAffx.19506.1.S1_at--689--3591Chr12:2520865..2520981 (25 bp)
CATTCTGACAAGTTCATCGAGGATC
LOC_Os12g05510
OsAffx.19506.1.S1_at--204--511Chr12:2520850..2520874 (25 bp)
ATCGAGGATCATGAGTTGGCACACC
LOC_Os12g05510
OsAffx.19506.1.S1_at--56--8891Chr12:2520839..2520863 (25 bp)
TGAGTTGGCACACCTGTCGGAGTTC
LOC_Os12g05510
OsAffx.19506.1.S1_at--1012--871Chr12:2520765..2520789 (25 bp)
AGGCCATCTGGACATGGCACCGCAA
LOC_Os12g05510
OsAffx.19506.1.S1_at--918--5151Chr12:2520744..2520768 (25 bp)
GCAACGACGACCAGCATGCCACTGT
LOC_Os12g05510
OsAffx.19506.1.S1_at--699--1531Chr12:2520732..2520756 (25 bp)
AGCATGCCACTGTTCGCGACGTCGT
LOC_Os12g05510
OsAffx.19506.1.S1_at--1136--3311Chr12:2520725..2520749 (25 bp)
CACTGTTCGCGACGTCGTTGTGCTG
LOC_Os12g05510
Target Sequence 
GTGGGATTATGATCGATTACAAGACGAGGATCTACGACAACGAAGCCAACAGCCAGGGCCCGATGTACATCACCATTGGC
GACGGAGGCAACGTGGACGGACATTCTGACAAGTTCATCGAGGATCATGAGTTGGCACACCTGTCGGAGTTCAGGGAGAT
GAGCTTCGGGCATGGGCGTCTGAGGATCGTGAGCGAGACGAAGGCCATCTGGACATGGCACCGCAACGACGACCAGCATG
CCACTGTTCGCGACGTCGTTGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis