Browse Element(s) Details


Os.51923.1.S1_at

Description gb:AK064287.1
DB_XREF= gi:32974305
TID=Os.51923.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H01, full insert sequence.
FL= gb:AK064287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0544011/11Cytochrome P450 family protein, expressed
LOC_Os12g054803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed
LOC_Os12g05430Os.9317.2.S1_at11/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.45407.1.S1_s_at3/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.26422.1.S1_x_at1/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05440Os.51923.1.S1_at11/1112+2466931..2468702Cytochrome P450 family protein, expressed
LOC_Os12g05450Os.52238.1.S1_at7/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450Os.49936.2.A1_at3/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450Os.33601.3.S1_x_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450OsAffx.828.1.S1_x_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g05450OsAffx.15708.1.S1_at1/1112+2492295..2498687retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51923.1.S1_at--1051--9171Chr12:2467270..2467294 (25 bp)
TGCCGGAGAGCCTCTTCAAGTACCC
LOC_Os12g05440
Os.51923.1.S1_at--203--7272Chr12:2507929..2507953 (25 bp)
GTCCATCAGCGGTGGGCTCCCAGTG
LOC_Os12g05480
Os.51923.1.S1_at--86--7752Chr12:2507919..2507943 (25 bp)
GGTGGGCTCCCAGTGAAGATCAGAC
LOC_Os12g05480
Os.51923.1.S1_at--710--4792Chr12:2507914..2507938 (25 bp)
GCTCCCAGTGAAGATCAGACGCGTT
LOC_Os12g05480
Os.51923.1.S1_at--116--6452Chr12:2507902..2507926 (25 bp)
GATCAGACGCGTTTAGACTTGCACA
NONE
Os.51923.1.S1_at--326--5812Chr12:2467042..2467066 (25 bp)
GACGCGTTTAGACTTGCACACAGCA
LOC_Os12g05440
Os.51923.1.S1_at--44--10751Chr12:2467029..2467053 (25 bp)
TTGCACACAGCATAGTAGACAGACT
LOC_Os12g05440
Os.51923.1.S1_at--632--6951Chr12:2467015..2467039 (25 bp)
GTAGACAGACTTCTTTTTCATTCAC
LOC_Os12g05440
Os.51923.1.S1_at--567--5691Chr12:2467008..2467032 (25 bp)
GACTTCTTTTTCATTCACTGTATCA
LOC_Os12g05440
Os.51923.1.S1_at--553--3591Chr12:2466997..2467021 (25 bp)
CATTCACTGTATCAACAAATTGGAT
LOC_Os12g05440
Os.51923.1.S1_at--282--2891Chr12:2466939..2466963 (25 bp)
AAGGGAGAAATCAATATACCAAATT
LOC_Os12g05440
Target Sequence 
TGCCGGAGAGCCTCTTCAAGTACCCGGTGTTCCAGGCCGGCCTCCGCGTGTGCCTCGGCAAGGAGCTCGCCATCACCGAG
ATGAAGGCGGTCAGCGTCGCCGTCGTGAGGGCATTCGACGTCGAGGTCGTCGGCGAGAATGGCCGGTGCGGCGGCGGCGC
CGCCGCCGCGCCAAGATTCGTGCCGGGGCTCACCGCGTCCATCAGCGGTGGGCTCCCAGTGAAGATCAGACGCGTTTAGA
CTTGCACACAGCATAGTAGACAGACTTCTTTTTCATTCACTGTATCAACAAATTGGATAAGAAATTAAATAGGCATGTAC
ATAGAACAAAAAAGGGAGAAATCAATATACCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis