Browse Element(s) Details


Os.50606.1.S1_at

Description gb:AK122055.1
DB_XREF= gi:37991701
TID=Os.50606.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114K20, full insert sequence.
FL= gb:AK122055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0539411/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05380Os.57061.1.S1_at11/1112+2432328..2433867Glycosyltransferase 3, putative, expressed
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed
LOC_Os12g05430Os.9317.2.S1_at11/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.45407.1.S1_s_at3/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.26422.1.S1_x_at1/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05440Os.51923.1.S1_at11/1112+2466931..2468702Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50606.1.S1_at--819--751Chr12:2444491..2444515 (25 bp)
ATGTCGGACGATGACAGCTGCCCCG
LOC_Os12g05394
Os.50606.1.S1_at--977--8231Chr12:2444584..2444608 (25 bp)
GGCACCACCATGTCCGTGCAAAAGG
LOC_Os12g05394
Os.50606.1.S1_at--619--851Chr12:2444757..2444781 (25 bp)
ATGGCAAGCGACAAGGAGCACACAC
LOC_Os12g05394
Os.50606.1.S1_at--1012--3351Chr12:2444787..2444811 (25 bp)
CACCGTTCCAACGACTTATTGTCAA
LOC_Os12g05394
Os.50606.1.S1_at--577--9011Chr12:2444816..2444840 (25 bp)
TGAATTTTTCTCTGGCATATGCTGC
LOC_Os12g05394
Os.50606.1.S1_at--54--9691Chr12:2444846..2444870 (25 bp)
TCACTCACCTACATGCTAGCATAAC
LOC_Os12g05394
Os.50606.1.S1_at--83--4971Chr12:2444864..2444888 (25 bp)
GCATAACATCAGCATTAGTCCTATA
LOC_Os12g05394
Os.50606.1.S1_at--1140--10311Chr12:2444906..2444930 (25 bp)
TTTAACTTAACCCATCTAGAACAGA
LOC_Os12g05394
Os.50606.1.S1_at--1062--151Chr12:2444943..2444967 (25 bp)
ATTATTTCGTCCAATGTTTCATGCA
LOC_Os12g05394
Os.50606.1.S1_at--761--2831Chr12:2444968..2444992 (25 bp)
AAGTTTATGCATTGTACTCTCTTGT
LOC_Os12g05394
Os.50606.1.S1_at--900--3751Chr12:2444984..2445008 (25 bp)
CTCTCTTGTAGCGAGTTCAGACTTC
LOC_Os12g05394
Target Sequence 
ATGTCGGACGATGACAGCTGCCCCGGCACGCCCGTGGAGTACTACTAGAGACAAGCAAAGCCAAGCCAAGCCAAGGAAGC
TGCCACCATGGCTGGCACCACCATGTCCGTGCAAAAGGAAAGCTGCTGCCGCCATTGGCCAGCGCACGTGGTGGTGGGGA
TCCCACCCATGGACCGTGGCGCATGGCGCGCACGAGGGCAAGCCGGCCGGCGGAGCAGGCGTCGAGTAGTGGGCCGGGGG
CGTGGCGGGGGCGCGCCGCGCCGCGCCATGGCAAGCGACAAGGAGCACACACACACCCACCGTTCCAACGACTTATTGTC
AAACTCTGAATTTTTCTCTGGCATATGCTGCCCGTCTCACTCACCTACATGCTAGCATAACATCAGCATTAGTCCTATAG
TATAATAGTACTACACTTTAACTTAACCCATCTAGAACAGACAATTTAGCTTTATTATTTCGTCCAATGTTTCATGCAAA
GTTTATGCATTGTACTCTCTTGTAGCGAGTTCAGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis