Browse Element(s) Details


Os.57061.1.S1_at

Description gb:AK110842.1
DB_XREF= gi:32996051
TID=Os.57061.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B07, full insert sequence.
FL= gb:AK110842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0538011/11Glycosyltransferase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05350NANA12+2410369..2411119hypothetical protein
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05380Os.57061.1.S1_at11/1112+2432328..2433867Glycosyltransferase 3, putative, expressed
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57061.1.S1_at--1010--4231Chr12:2432862..2432886 (25 bp)
CCGGGAAGGTTCTGACGGCAAGCTT
LOC_Os12g05380
Os.57061.1.S1_at--434--5851Chr12:2432809..2432833 (25 bp)
GACCAGTCGGCGCTGATCCACATAC
LOC_Os12g05380
Os.57061.1.S1_at--223--6371Chr12:2432795..2432819 (25 bp)
GATCCACATACTGCTGACGCAAAAG
LOC_Os12g05380
Os.57061.1.S1_at--748--8651Chr12:2432751..2432775 (25 bp)
TGTACGTGGAGGACAAGTACTTCCT
LOC_Os12g05380
Os.57061.1.S1_at--75--2851Chr12:2432737..2432761 (25 bp)
AAGTACTTCCTCCATGGATTCTGGG
LOC_Os12g05380
Os.57061.1.S1_at--681--8871Chr12:2432685..2432709 (25 bp)
TGATGGAGAGGCACCACCCGGGCCT
LOC_Os12g05380
Os.57061.1.S1_at--1140--8331Chr12:2432526..2432550 (25 bp)
GGCTGTACGGATTCCGGCACCGGTC
LOC_Os12g05380
Os.57061.1.S1_at--981--8451Chr12:2432475..2432499 (25 bp)
TGGCGAACCGGACGGATAACCCGCT
LOC_Os12g05380
Os.57061.1.S1_at--737--4131Chr12:2432454..2432478 (25 bp)
CGCTGGTCAACAAGGAGGCCGCGCT
LOC_Os12g05380
Os.57061.1.S1_at--14--8111Chr12:2432423..2432447 (25 bp)
GGACGCCAAGATCGAGAGCTGAATT
LOC_Os12g05380
Os.57061.1.S1_at--4--7471Chr12:2432363..2432387 (25 bp)
GTGTGATCGATGCTACAGATTTTGT
LOC_Os12g05380
Target Sequence 
CCGGGAAGGTTCTGACGGCAAGCTTGACGGGGCGGCCGGCGTTCGAGGCGGACGACCAGTCGGCGCTGATCCACATACTG
CTGACGCAAAAGGAGAGGTGGATGGAGAAGGTGTACGTGGAGGACAAGTACTTCCTCCATGGATTCTGGGCGGGGCTCGT
GGACAAGTACGAGGAGATGATGGAGAGGCACCACCCGGGCCTCGGCGACGAGCGGTGGCCGTTCGTCACCCACTTCGTCG
GGTGCAAGCCGTGCGGCGGCTACGGTGACTACCCGCGGGAGCGCTGCCTGGGCGGCATGGAGCGCGCGTTCAACTTCGCC
GACAACCAGGTGCTCCGGCTGTACGGATTCCGGCACCGGTCGCTGGCGAGCGCCCGGGTCCGGCGGGTGGCGAACCGGAC
GGATAACCCGCTGGTCAACAAGGAGGCCGCGCTCAAGATGGACGCCAAGATCGAGAGCTGAATTTTTTTTATCTGAATTA
AGCTTGGAGATAATCAAATGTGTGATCGATGCTACAGATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis