Browse Element(s) Details


Os.55754.1.S1_x_at

Description gb:AK108734.1
DB_XREF= gi:32993943
TID=Os.55754.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D06, full insert sequence.
FL= gb:AK108734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0536011/11expressed protein
LOC_Os11g052801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05320Os.56249.1.A1_at11/1112+2388855..2394275expressed protein
LOC_Os12g05330Os.27230.1.A1_at11/1112+2394804..2396717expressed protein
LOC_Os12g05340OsAffx.31593.1.S1_at11/1112+2406163..2406522hypothetical protein
LOC_Os12g05350NANA12+2410369..2411119hypothetical protein
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05380Os.57061.1.S1_at11/1112+2432328..2433867Glycosyltransferase 3, putative, expressed
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55754.1.S1_x_at--494--972Chr12:2417994..2418018 (25 bp)
AGGAGCGCGCTCGAGAGCCGCCTAT
LOC_Os12g05360
Os.55754.1.S1_x_at--979--1732Chr12:2418080..2418104 (25 bp)
ACCTTGACTTCACCATCTTCTTCTT
LOC_Os12g05360
Os.55754.1.S1_x_at--993--1551Chr12:2418112..2418136 (25 bp)
AGCTTCTTCATTGCCTCATTTGATG
LOC_Os12g05360
Os.55754.1.S1_x_at--934--8492Chr12:2418138..2418162 (25 bp)
TGGAATTTACCAAACCATCAAACCA
LOC_Os12g05360
Os.55754.1.S1_x_at--999--4291Chr12:2418152..2418176 (25 bp)
CCATCAAACCAAATATGTGTCCTTT
LOC_Os12g05360
Os.55754.1.S1_x_at--214--8671Chr12:2418167..2418191 (25 bp)
TGTGTCCTTTGATTACAACTTCCAA
LOC_Os12g05360
Os.55754.1.S1_x_at--353--6551Chr12:2418177..2418201 (25 bp)
GATTACAACTTCCAACTTAGATTAG
LOC_Os12g05360
Os.55754.1.S1_x_at--703--1251Chr12:2418217..2418241 (25 bp)
AGATAAGATTATCATCATGTCTGGG
LOC_Os12g05360
Os.55754.1.S1_x_at--639--8511Chr12:2418256..2418280 (25 bp)
TGGACAGGTCATATACTGAGAGATT
LOC_Os12g05360
Os.55754.1.S1_x_at--467--7431Chr12:2418290..2418314 (25 bp)
GTGTAGTGTAGGATCGTTTTTTATT
LOC_Os12g05360
Os.55754.1.S1_x_at--21--171Chr12:2418315..2418339 (25 bp)
ATTATTATTATTGCTTTTCCTCTTT
LOC_Os12g05360
Target Sequence 
AGGAGCGCGCTCGAGAGCCGCCTATGGCTGGAGGAGGAGGCCGCCGCGCCGGCCTTCTCCCTCCTCGTCGAGGCCTTCAA
GTCCCCACCTTGACTTCACCATCTTCTTCTTCTTCAACAGCTTCTTCATTGCCTCATTTGATGATGGAATTTACCAAACC
ATCAAACCAAATATGTGTCCTTTGATTACAACTTCCAACTTAGATTAGATTTTCTTTTATGGGAGATAAGATTATCATCA
TGTCTGGGGAAAAACAACATCATGGACAGGTCATATACTGAGAGATTGGTGTGATTGTGTAGTGTAGGATCGTTTTTTAT
TATTATTATTATTGCTTTTCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis