Browse Element(s) Details


Os.27230.1.A1_at

Description gb:AK107332.1
DB_XREF= gi:32992541
TID=Os.27230.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F05, full insert sequence.
FL= gb:AK107332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0533011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05310Os.53737.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05310Os.51693.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05320Os.56249.1.A1_at11/1112+2388855..2394275expressed protein
LOC_Os12g05330Os.27230.1.A1_at11/1112+2394804..2396717expressed protein
LOC_Os12g05340OsAffx.31593.1.S1_at11/1112+2406163..2406522hypothetical protein
LOC_Os12g05350NANA12+2410369..2411119hypothetical protein
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27230.1.A1_at--1070--1611Chr12:2395378..2395402 (25 bp)
AGCTGGTTCGCGCATTGAAATGGAC
LOC_Os12g05330
Os.27230.1.A1_at--810--2071Chr12:2395355..2395379 (25 bp)
ACATTATGTGTGTGGGTGTCTCTCT
LOC_Os12g05330
Os.27230.1.A1_at--485--8671Chr12:2395331..2395355 (25 bp)
TGTGTCTACGTTTTCATCCTTGTTC
LOC_Os12g05330
Os.27230.1.A1_at--661--571Chr12:2395316..2395340 (25 bp)
ATCCTTGTTCTTGCCATGATCTGTT
LOC_Os12g05330
Os.27230.1.A1_at--422--711Chr12:2395301..2395325 (25 bp)
ATGATCTGTTGGAGCCGGTCACCAT
LOC_Os12g05330
Os.27230.1.A1_at--1070--3531Chr12:2395279..2395303 (25 bp)
CATCGGCGTTTTCTTCGAGGGACAG
LOC_Os12g05330
Os.27230.1.A1_at--311--8151Chr12:2395132..2395156 (25 bp)
GGAAAGCACAACATGGAACTCTACA
LOC_Os12g05330
Os.27230.1.A1_at--1042--6691Chr12:2395086..2395110 (25 bp)
GTTCACTGAGGGTTCAACTTCTGGT
LOC_Os12g05330
Os.27230.1.A1_at--350--10512Chr03:19812965..19813090 (25 bp)
TTCAACTTCTGGTGTGGCAATGGAT
NONE
Os.27230.1.A1_at--9--371Chr12:2394965..2394989 (25 bp)
ATAATCACGGTTTGGTGCACTCAAG
LOC_Os12g05330
Os.27230.1.A1_at--633--10171Chr12:2394934..2394958 (25 bp)
TATTAGACCCAAACGGCTTCGTACA
LOC_Os12g05330
Target Sequence 
AGCTGGTTCGCGCATTGAAATGGACATTATGTGTGTGGGTGTCTCTCTGTGTCTACGTTTTCATCCTTGTTCTTGCCATG
ATCTGTTGGAGCCGGTCACCATCGGCGTTTTCTTCGAGGGACAGGAGATTGTATGATCATCAGGTCATTGAGAATTCTGG
TATGGACATGGGAGATTCAGGTGAGAGATCAGACAAGGAATTGTATGGAGGTGTTGGAGTTAAGTGGAAGCAGAGGATAA
GAAAGAGGAAAGCACAACATGGAACTCTACAAGGAGACAGGATGGAGCTGAAGTTCACTGAGGGTTCAACTTCTGGTGTG
GCAATGGATGGAGAGTAGGGGTTGTGCTCAACTTTGTGTCTGAATTCAATTAAATCGTTCAAAAGCAGTTTAATATGAAG
CTTGTGTTGANTTATAATCACGGTTTGGTGCACTCAAGGTTGTTTATTAGACCCAAACGGCTTCGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27230.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis