Browse Element(s) Details


Os.56249.1.A1_at

Description gb:AK109690.1
DB_XREF= gi:32994899
TID=Os.56249.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E05, full insert sequence.
FL= gb:AK109690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0532011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05310Os.53737.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05310Os.51693.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05320Os.56249.1.A1_at11/1112+2388855..2394275expressed protein
LOC_Os12g05330Os.27230.1.A1_at11/1112+2394804..2396717expressed protein
LOC_Os12g05340OsAffx.31593.1.S1_at11/1112+2406163..2406522hypothetical protein
LOC_Os12g05350NANA12+2410369..2411119hypothetical protein
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56249.1.A1_at--467--9691Chr12:2392466..2392490 (25 bp)
TCACTGCTCTCGTACTGTGGGAATT
LOC_Os12g05320
Os.56249.1.A1_at--761--9771Chr12:2392538..2392562 (25 bp)
TAAGGACTGTTGGATCCCTAGGGTT
LOC_Os12g05320
Os.56249.1.A1_at--465--6831Chr12:2392591..2392615 (25 bp)
GTTTCAAGTATCGTTTCTGTGCTCC
LOC_Os12g05320
Os.56249.1.A1_at--613--7311Chr12:2393930..2393954 (25 bp)
GTGCTGTATGCAACCACCTTGGTGA
LOC_Os12g05320
Os.56249.1.A1_at--768--5791Chr12:2393974..2393998 (25 bp)
GACGAACTTATGTAACCACCTGCTA
LOC_Os12g05320
Os.56249.1.A1_at--312--3691Chr12:2393996..2394020 (25 bp)
CTAACTAGCCAGAGCCTTTAGGCAT
LOC_Os12g05320
Os.56249.1.A1_at--601--10191Chr12:2394089..2394113 (25 bp)
TATATAAATTTGTGCCTTCTGTCGG
LOC_Os12g05320
Os.56249.1.A1_at--264--10611Chr12:2394105..2394129 (25 bp)
TTCTGTCGGCAAGTTGTGCCAACTT
LOC_Os12g05320
Os.56249.1.A1_at--400--2331Chr12:2394158..2394182 (25 bp)
AAAGTACTTACGCACACACCTTAGC
LOC_Os12g05320
Os.56249.1.A1_at--197--1751Chr12:2394175..2394199 (25 bp)
ACCTTAGCTTTGCAGCTTCGCTAAT
LOC_Os12g05320
Os.56249.1.A1_at--28--5871Chr12:2394219..2394243 (25 bp)
GAGCCATATGTGCTGTATTGGGTAT
LOC_Os12g05320
Target Sequence 
TCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACT
GTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCG
ACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAA
AGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTA
ACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTT
AAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCTATTTATATAAAATTAGTTTGTACA
AAGTACTTACGCACACACCTTAGCTTTGCAGCTTCGCTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTG
GGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56249.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis