Browse Element(s) Details


OsAffx.31595.1.S1_x_at

Description tigr:9639.m00448
TID=OsAffx.31595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=second messenger-dependent protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0532011/11Protein kinase domain containing protein, expressed
LOC_Os12g053942/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05260Os.9756.1.S1_a_at11/1111+2325827..2329111phosphoglycerate mutase family protein, expressed
LOC_Os11g05270OsAffx.18683.1.S1_at11/1111+2331554..2332567hypothetical protein
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein
LOC_Os11g05300OsAffx.18684.1.S1_at11/1111+2341589..2343975Zinc finger, C3HC4 type family protein
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05330Os.18650.1.S1_at11/1111+2359741..2360341expressed protein
LOC_Os11g05340OsAffx.18686.1.S1_at10/1111+2360348..2367995transposon protein, putative, unclassified, expressed
LOC_Os11g05350OsAffx.30827.1.S1_x_at11/1111+2371868..2372341hypothetical protein
LOC_Os11g05360NANA11+2374998..2376272transposon protein, putative, unclassified
LOC_Os11g05370Os.45407.1.S1_s_at1/1111+2378587..237904760S ribosomal protein L26-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31595.1.S1_x_at--306--8231Chr11:2356160..2356184 (25 bp)
GGCAATGGCGGCAGCAGCTTCCCCT
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--1036--3631Chr11:2356177..2356201 (25 bp)
CTTCCCCTCCGGTGGGCTGGAGCTG
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--1110--8071Chr11:2356222..2356246 (25 bp)
GGAGCTCCGGTCGATGTCGTTCGTC
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--631--10631Chr11:2356334..2356358 (25 bp)
TTCGAGCTGCTCTACGGCGTGACGC
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--1021--6751Chr11:2356360..2356384 (25 bp)
GTTCAAGGGCCACGACAACGAGATG
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--1040--5613Chr12:2444221..2444245 (25 bp)
GACAACGAGATGACCCTGGCGAACA
LOC_Os12g05394
OsAffx.31595.1.S1_x_at--444--692Chr12:2444230..2444254 (25 bp)
ATGACCCTGGCGAACATCGTGGCGC
LOC_Os12g05394
OsAffx.31595.1.S1_x_at--685--8831Chr11:2356521..2356545 (25 bp)
TGATCAAGCGGCACCCCTTCTTCAG
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--770--4211Chr11:2356638..2356662 (25 bp)
CCGCGAACGCTGACATGTCATACGA
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--977--5431Chr11:2356642..2356666 (25 bp)
GAACGCTGACATGTCATACGACGAC
LOC_Os11g05320
OsAffx.31595.1.S1_x_at--697--8951Chr11:2356648..2356672 (25 bp)
TGACATGTCATACGACGACGACAGC
LOC_Os11g05320
Target Sequence 
GGCAATGGCGGCAGCAGCTTCCCCTCCGGTGGGCTGGAGCTGGAGTTCGTGGCGGAGCCGGTGGAGCTCCGGTCGATGTC
GTTCGTCGGGACGCACGAGTACCTCGCGCCGGAGATCGTCTCCGGCGAGGGGCACGGCAGCTCCGTCGACTGGTGGACGC
TGGGGGTGTTCGTCTTCGAGCTGCTCTACGGCGTGACGCCGTTCAAGGGCCACGACAACGAGATGACCCTGGCGAACATC
GTGGCGCGCGCGCTCGAGTTCCCCAGGGAGCCGCCCGTCTCCGCCGCCGCCAAGGACCTCGTCACGTCGCTCCTCGCCAA
GGACCCGGCGCGCCGCCTCGGCGCCACCGTCGGCGCCGCGGTGATCAAGCGGCACCCCTTCTTCAGCGGCGTCAACTGGG
CGCTCCTCCGCTGCGCCACGCCTCCGTACGTTCCCCCGCCGTTCAGCGTCGCCACCGCCACCGCCGCGAACGCCGCCGCC
GCGAACGCTGACATGTCATACGACGACGACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31595.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis