Browse Element(s) Details


Os.18650.1.S1_at

Description gb:AK107875.1
DB_XREF= gi:32993084
TID=Os.18650.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-C12, full insert sequence.
FL= gb:AK107875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0533011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein
LOC_Os11g05300OsAffx.18684.1.S1_at11/1111+2341589..2343975Zinc finger, C3HC4 type family protein
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05330Os.18650.1.S1_at11/1111+2359741..2360341expressed protein
LOC_Os11g05340OsAffx.18686.1.S1_at10/1111+2360348..2367995transposon protein, putative, unclassified, expressed
LOC_Os11g05350OsAffx.30827.1.S1_x_at11/1111+2371868..2372341hypothetical protein
LOC_Os11g05360NANA11+2374998..2376272transposon protein, putative, unclassified
LOC_Os11g05370Os.45407.1.S1_s_at1/1111+2378587..237904760S ribosomal protein L26-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18650.1.S1_at--9--3611Chr11:2359798..2359822 (25 bp)
CTTGGCGATTCGACGGCTACGGCCG
LOC_Os11g05330
Os.18650.1.S1_at--178--1631Chr11:2359868..2359892 (25 bp)
AGCGGACGCGACTTTTCTGGATGCA
LOC_Os11g05330
Os.18650.1.S1_at--109--4611Chr11:2359875..2359899 (25 bp)
GCGACTTTTCTGGATGCAACGGCGG
LOC_Os11g05330
Os.18650.1.S1_at--561--8091Chr11:2360000..2360024 (25 bp)
GGAGCCCGGCAATGGTTGAAGCTAT
LOC_Os11g05330
Os.18650.1.S1_at--656--8991Chr11:2360016..2360040 (25 bp)
TGAAGCTATGATTCGTCGGTGACGG
LOC_Os11g05330
Os.18650.1.S1_at--204--6351Chr11:2360106..2360130 (25 bp)
GATGCGTGGCACAACATGCAGAGTG
LOC_Os11g05330
Os.18650.1.S1_at--559--1971Chr11:2360140..2360164 (25 bp)
ACTGATCCATAAGGTGTGTGTTAAT
LOC_Os11g05330
Os.18650.1.S1_at--603--7411Chr11:2360157..2360181 (25 bp)
GTGTTAATTGGTTGCTTTTTGTGGT
LOC_Os11g05330
Os.18650.1.S1_at--363--3091Chr11:2360251..2360275 (25 bp)
AATAGTTCATACAGTTGGGACAATC
LOC_Os11g05330
Os.18650.1.S1_at--1157--6591Chr11:2360264..2360288 (25 bp)
GTTGGGACAATCAGAACCGATAGAT
LOC_Os11g05330
Os.18650.1.S1_at--899--51Chr11:2360313..2360337 (25 bp)
ATTGAGATGTAGACACAGTGTTGCA
LOC_Os11g05330
Target Sequence 
CTTGGCGATTCGACGGCTACGGCCGGCNTCGGCGGCGCTGGATCGGTGGCGGTGGTGATTCGTCGGCGACAGCGGACGCG
ACTTTTCTGGATGCAACGGCGGCGCTGCATCGGCGGTGGCGGCGGCGAATCGTCGCCGACTGCGGGCAGCGGCCTCGATG
CGTAGGCGGCGCTGCATCGTTGGCGGCGGCGATTCGTCGGCGGGAGCCCGGCAATGGTTGAAGCTATGATTCGTCGGTGA
CGGCGGGCGGCCGGGGCTGCATCGTCGGCGGCGACGGTGAATCGTCGGCCACTGCGGGNAGCGGCCTCGATGCGTGGCAC
AACATGCAGAGTGAGGGAGAAAACTGATCCATAAGGTGTGTGTTAATTGGTTGCTTTTTGTGGTTTTTTATTCATTGTAT
GGGTATTATATATTTCCCCCAATAAATCGGTGGTGATAGATTGAAATTGTCAAAATAGTTCATACAGTTGGGACAATCAG
AACCGATAGATTCAAAGACATGGTTGGAAAGAAAAATTGAGATGTAGACACAGTGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis