Browse Element(s) Details


OsAffx.18686.1.S1_at

Description tigr:9639.m00449
TID=OsAffx.18686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0534010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein
LOC_Os11g05300OsAffx.18684.1.S1_at11/1111+2341589..2343975Zinc finger, C3HC4 type family protein
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05330Os.18650.1.S1_at11/1111+2359741..2360341expressed protein
LOC_Os11g05340OsAffx.18686.1.S1_at10/1111+2360348..2367995transposon protein, putative, unclassified, expressed
LOC_Os11g05350OsAffx.30827.1.S1_x_at11/1111+2371868..2372341hypothetical protein
LOC_Os11g05360NANA11+2374998..2376272transposon protein, putative, unclassified
LOC_Os11g05370Os.45407.1.S1_s_at1/1111+2378587..237904760S ribosomal protein L26-1, putative, expressed
LOC_Os11g05380Os.14105.1.S1_at11/1111+2386354..2388224Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18686.1.S1_at--359--5871Chr11:2361343..2361367 (25 bp)
GAGCCTAGTTATTTTGGTGGAGCAT
LOC_Os11g05340
OsAffx.18686.1.S1_at--581--2511Chr11:2361314..2361338 (25 bp)
AACATTGTTTGTCGCGTATCCATCA
LOC_Os11g05340
OsAffx.18686.1.S1_at--341--7991NONE
GGATGCAAAGGCTTCACAATCAGTT
NONE
OsAffx.18686.1.S1_at--599--10451Chr11:2360948..2360972 (25 bp)
TTAGAGGCCATACCAAGCTTCTGCA
LOC_Os11g05340
OsAffx.18686.1.S1_at--857--1531Chr11:2360933..2360957 (25 bp)
AGCTTCTGCATAGCACGACGGTGGA
LOC_Os11g05340
OsAffx.18686.1.S1_at--949--6231Chr11:2360844..2360868 (25 bp)
GATGGAACGCTATCGTCAACTACGA
LOC_Os11g05340
OsAffx.18686.1.S1_at--91--2711Chr11:2360806..2360830 (25 bp)
AAGCTTTTTTCCGATGTTCCATGAC
LOC_Os11g05340
OsAffx.18686.1.S1_at--370--10531Chr11:2360695..2360719 (25 bp)
TTCAGTTTGGTCATGTGGTTCGTCA
LOC_Os11g05340
OsAffx.18686.1.S1_at--9--6371Chr11:2360630..2360654 (25 bp)
GATCCAGAACTAGTTGTCCCTAAAG
LOC_Os11g05340
OsAffx.18686.1.S1_at--511--8151Chr11:2360421..2360584 (25 bp)
GGAAATTACTTTCAGTCCACGAAGA
LOC_Os11g05340
OsAffx.18686.1.S1_at--107--5771Chr11:2360391..2360415 (25 bp)
GACGTCTTGAGTCTGAACATGGCAA
LOC_Os11g05340
Target Sequence 
GAGCCTAGTTATTTTGGTGGAGCATTATGAACATTGTTTGTCGCGTATCCATCACCAAGAGGCAGAGTTGGATGCAAAGG
CTTCACAATCAGTTTTGAGTTATTTACAGTTAGAGGCCATACCAAGCTTCTGCATAGCACGACGGTGGACAATGCAAGCA
AAATCTGCATTTCCTTCAGATAGGTATGGTGAAGTTTACACATGGTCAGACCAGATGGAACGCTATCGTCAACTACGAAC
AGTGGCTAGTGAAGCTTTTTTCCGATGTTCCATGACAGAAGAAAGTACACTGAAGGTGATGAAAATGCTAGATAATTTGA
TGCTTGAAGATGACTGTAGTGCAAATTGTGACAACTTTGAGATTCAGTTTGGTCATGTGGTTCGTCAAAGTATGCGCACT
GACATTGAAAGTAGTGAGAAAGTGCTTGATCCAGAACTAGTTGTCCCTAAAGGAGCTCCTACAAAGAGAATGAGAGGTTT
CTTGGAGAAACGCAAGAGGAAATTACTTTCAGTCCACGAAGACATAAGACGTCTTGAGTCTGAACATGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis